Hb_000227_170

Information

Type -
Description -
Location Contig227: 144137-147522
Sequence    

Annotation

kegg
ID rcu:RCOM_0913730
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002517195.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q3E9C3
description DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana GN=RH58 PE=2 SV=1
trembl
ID A0A067KVF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02130 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23608: 144189-147510 , PASA_asmbl_23609: 144191-146166 , PASA_asmbl_23610: 146575-147510 , PASA_asmbl_23611: 144449-145162
cDNA
(Sanger)
(ID:Location)		 044_A07.ab1: 144191-145304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_170 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_107879_010 0.0702190319 - - phosphoglycerate mutase, putative [Ricinus communis]
3 Hb_001935_100 0.0733544741 - - structural molecule, putative [Ricinus communis]
4 Hb_000025_780 0.0734608997 - - PREDICTED: sanguinarine reductase [Jatropha curcas]
5 Hb_005494_010 0.0806380456 - - catalytic, putative [Ricinus communis]
6 Hb_003029_070 0.0809921243 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000304_070 0.0843349738 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
8 Hb_005539_010 0.0845252181 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
9 Hb_002759_190 0.0853608781 - - PREDICTED: protein NLRC3 [Jatropha curcas]
10 Hb_003513_010 0.0859313953 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
11 Hb_000221_140 0.0883661995 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
12 Hb_004330_090 0.0885521866 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
13 Hb_000212_440 0.0905441448 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000976_120 0.0913785595 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
15 Hb_001195_460 0.0919271484 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
16 Hb_012022_150 0.0922773287 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
17 Hb_006538_120 0.09361618 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
18 Hb_005588_080 0.093892633 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
19 Hb_000300_180 0.0941181708 - - transcription initiation factor brf1, putative [Ricinus communis]
20 Hb_007533_010 0.0943326245 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000227_170 Hb_000227_170 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_001935_100 Hb_001935_100 Hb_000227_170--Hb_001935_100 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_005494_010 Hb_005494_010 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070 Hb_000270_680 Hb_000270_680 Hb_107879_010--Hb_000270_680 Hb_001472_100 Hb_001472_100 Hb_107879_010--Hb_001472_100 Hb_000579_120 Hb_000579_120 Hb_107879_010--Hb_000579_120 Hb_000110_310 Hb_000110_310 Hb_107879_010--Hb_000110_310 Hb_003513_010 Hb_003513_010 Hb_107879_010--Hb_003513_010 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_000025_780--Hb_000796_160 Hb_000025_780--Hb_001410_070 Hb_000025_780--Hb_001935_100 Hb_007533_010 Hb_007533_010 Hb_000025_780--Hb_007533_010 Hb_000025_780--Hb_005494_010 Hb_113853_010 Hb_113853_010 Hb_005494_010--Hb_113853_010 Hb_001623_270 Hb_001623_270 Hb_005494_010--Hb_001623_270 Hb_005494_010--Hb_005946_040 Hb_005494_010--Hb_000304_070 Hb_001109_050 Hb_001109_050 Hb_005494_010--Hb_001109_050 Hb_000753_240 Hb_000753_240 Hb_003029_070--Hb_000753_240 Hb_002876_220 Hb_002876_220 Hb_003029_070--Hb_002876_220 Hb_000300_180 Hb_000300_180 Hb_003029_070--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040 Hb_010863_050 Hb_010863_050 Hb_000304_070--Hb_010863_050 Hb_000304_070--Hb_001623_270 Hb_001824_080 Hb_001824_080 Hb_000304_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000304_070--Hb_005588_080 Hb_000254_100 Hb_000254_100 Hb_000304_070--Hb_000254_100 Hb_000207_300 Hb_000207_300 Hb_000304_070--Hb_000207_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42646 3.92894 10.831 5.03039 6.10529 5.34784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.25261 8.57154 4.44759 4.54356 10.9897

CAGE analysis