Hb_000227_190

Information

Type -
Description -
Location Contig227: 153205-159010
Sequence    

Annotation

kegg
ID rcu:RCOM_0913770
description mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative (EC:1.3.1.74)
nr
ID XP_012069568.1
description PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
swissprot
ID Q40541
description Mitogen-activated protein kinase kinase kinase NPK1 OS=Nicotiana tabacum GN=NPK1 PE=1 SV=1
trembl
ID B9RTY0
description Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative OS=Ricinus communis GN=RCOM_0913770 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23613: 153152-153435 , PASA_asmbl_23614: 153459-157344 , PASA_asmbl_23615: 157450-159060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_190 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
2 Hb_007017_080 0.1020212338 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_005695_120 0.1154471066 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
4 Hb_003001_090 0.1289222011 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
5 Hb_010577_030 0.1344035548 - - PREDICTED: putative cyclin-B3-1 isoform X1 [Jatropha curcas]
6 Hb_005054_080 0.1344976899 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
7 Hb_000916_070 0.1406017614 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
8 Hb_003567_030 0.1406943802 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
9 Hb_004884_160 0.144318444 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
10 Hb_001124_070 0.1465720758 - - Serine/threonine-protein kinase ULK4 [Gossypium arboreum]
11 Hb_001951_130 0.1519342912 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
12 Hb_004032_030 0.1533337747 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
13 Hb_002960_150 0.1548041901 - - hypothetical protein CISIN_1g029215mg [Citrus sinensis]
14 Hb_000392_340 0.1548612624 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
15 Hb_001799_030 0.1559351056 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
16 Hb_006816_260 0.1590189053 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
17 Hb_052805_010 0.1625994951 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
18 Hb_148121_040 0.1642265826 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
19 Hb_002681_200 0.165053793 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
20 Hb_002660_150 0.1670996742 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_190 Hb_000227_190 Hb_007017_080 Hb_007017_080 Hb_000227_190--Hb_007017_080 Hb_005695_120 Hb_005695_120 Hb_000227_190--Hb_005695_120 Hb_003001_090 Hb_003001_090 Hb_000227_190--Hb_003001_090 Hb_010577_030 Hb_010577_030 Hb_000227_190--Hb_010577_030 Hb_005054_080 Hb_005054_080 Hb_000227_190--Hb_005054_080 Hb_000916_070 Hb_000916_070 Hb_000227_190--Hb_000916_070 Hb_007017_080--Hb_010577_030 Hb_002960_150 Hb_002960_150 Hb_007017_080--Hb_002960_150 Hb_001799_030 Hb_001799_030 Hb_007017_080--Hb_001799_030 Hb_001085_260 Hb_001085_260 Hb_007017_080--Hb_001085_260 Hb_012258_010 Hb_012258_010 Hb_007017_080--Hb_012258_010 Hb_005695_120--Hb_005054_080 Hb_002298_030 Hb_002298_030 Hb_005695_120--Hb_002298_030 Hb_052805_010 Hb_052805_010 Hb_005695_120--Hb_052805_010 Hb_004032_030 Hb_004032_030 Hb_005695_120--Hb_004032_030 Hb_003929_270 Hb_003929_270 Hb_005695_120--Hb_003929_270 Hb_000264_110 Hb_000264_110 Hb_005695_120--Hb_000264_110 Hb_003001_090--Hb_000916_070 Hb_003001_090--Hb_007017_080 Hb_001124_070 Hb_001124_070 Hb_003001_090--Hb_001124_070 Hb_003001_090--Hb_002960_150 Hb_010381_010 Hb_010381_010 Hb_003001_090--Hb_010381_010 Hb_007811_040 Hb_007811_040 Hb_010577_030--Hb_007811_040 Hb_003849_130 Hb_003849_130 Hb_010577_030--Hb_003849_130 Hb_010577_030--Hb_001124_070 Hb_026549_020 Hb_026549_020 Hb_010577_030--Hb_026549_020 Hb_010577_030--Hb_001799_030 Hb_000392_340 Hb_000392_340 Hb_005054_080--Hb_000392_340 Hb_005054_080--Hb_004032_030 Hb_005054_080--Hb_002298_030 Hb_000608_050 Hb_000608_050 Hb_005054_080--Hb_000608_050 Hb_005765_050 Hb_005765_050 Hb_005054_080--Hb_005765_050 Hb_000916_070--Hb_002960_150 Hb_000622_130 Hb_000622_130 Hb_000916_070--Hb_000622_130 Hb_067130_010 Hb_067130_010 Hb_000916_070--Hb_067130_010 Hb_124373_010 Hb_124373_010 Hb_000916_070--Hb_124373_010 Hb_010368_050 Hb_010368_050 Hb_000916_070--Hb_010368_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83439 0.799305 4.85149 6.83247 2.15853 2.22001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44361 3.20769 4.01675 1.69317 0.373189

CAGE analysis