Hb_000227_200

Information

Type -
Description -
Location Contig227: 167638-168738
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14890g
description POPTRDRAFT_657124; hypothetical protein
nr
ID XP_011021579.1
description PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
swissprot
ID Q6NMR8
description Protein FANTASTIC FOUR 3 OS=Arabidopsis thaliana GN=FAF3 PE=2 SV=1
trembl
ID A0A067KYU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23617: 168526-168838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_200 0.0 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
2 Hb_000784_040 0.1176892532 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
3 Hb_001587_210 0.1477619515 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
4 Hb_005914_070 0.1480480254 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001741_040 0.14860948 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
6 Hb_091433_040 0.157225753 - - PREDICTED: josephin-like protein [Jatropha curcas]
7 Hb_042223_010 0.172919498 - - Protein Z, putative [Ricinus communis]
8 Hb_000172_570 0.1731369718 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
9 Hb_000111_010 0.179643891 - - DNA-directed RNA polymerase, putative [Ricinus communis]
10 Hb_010174_070 0.1804767501 - - -
11 Hb_012053_040 0.1895923552 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
12 Hb_000103_110 0.189673064 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
13 Hb_000450_020 0.1974352668 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004064_020 0.2080708696 - - hypothetical protein M569_06853, partial [Genlisea aurea]
15 Hb_000363_150 0.2105286169 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
16 Hb_000972_010 0.2114981104 - - PREDICTED: kinesin KP1 [Jatropha curcas]
17 Hb_003599_070 0.2117151228 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000995_070 0.2123689183 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_003032_100 0.2209296896 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
20 Hb_000788_080 0.2220638021 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_200 Hb_000227_200 Hb_000784_040 Hb_000784_040 Hb_000227_200--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_005914_070 Hb_005914_070 Hb_000227_200--Hb_005914_070 Hb_001741_040 Hb_001741_040 Hb_000227_200--Hb_001741_040 Hb_091433_040 Hb_091433_040 Hb_000227_200--Hb_091433_040 Hb_042223_010 Hb_042223_010 Hb_000227_200--Hb_042223_010 Hb_000784_040--Hb_091433_040 Hb_000995_070 Hb_000995_070 Hb_000784_040--Hb_000995_070 Hb_000784_040--Hb_042223_010 Hb_000784_040--Hb_005914_070 Hb_003599_070 Hb_003599_070 Hb_000784_040--Hb_003599_070 Hb_001587_210--Hb_042223_010 Hb_001587_210--Hb_000784_040 Hb_003786_090 Hb_003786_090 Hb_001587_210--Hb_003786_090 Hb_001587_210--Hb_091433_040 Hb_000450_020 Hb_000450_020 Hb_001587_210--Hb_000450_020 Hb_005914_070--Hb_091433_040 Hb_003052_040 Hb_003052_040 Hb_005914_070--Hb_003052_040 Hb_113906_010 Hb_113906_010 Hb_005914_070--Hb_113906_010 Hb_000111_010 Hb_000111_010 Hb_005914_070--Hb_000111_010 Hb_001369_450 Hb_001369_450 Hb_005914_070--Hb_001369_450 Hb_003913_140 Hb_003913_140 Hb_001741_040--Hb_003913_140 Hb_000103_110 Hb_000103_110 Hb_001741_040--Hb_000103_110 Hb_002450_070 Hb_002450_070 Hb_001741_040--Hb_002450_070 Hb_001638_210 Hb_001638_210 Hb_001741_040--Hb_001638_210 Hb_000972_010 Hb_000972_010 Hb_001741_040--Hb_000972_010 Hb_091433_040--Hb_113906_010 Hb_091433_040--Hb_000450_020 Hb_091433_040--Hb_000111_010 Hb_156473_010 Hb_156473_010 Hb_042223_010--Hb_156473_010 Hb_100873_030 Hb_100873_030 Hb_042223_010--Hb_100873_030 Hb_000042_240 Hb_000042_240 Hb_042223_010--Hb_000042_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95399 0.639638 0.283757 1.59568 0.789936 0.532599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1336 37.7076 84.5694 5.81088 0.218706

CAGE analysis