Hb_000227_230

Information

Type -
Description -
Location Contig227: 198659-202398
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14910g
description POPTRDRAFT_719838; hypothetical protein
nr
ID XP_012069571.1
description PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
swissprot
ID Q5T280
description Putative methyltransferase C9orf114 OS=Homo sapiens GN=C9orf114 PE=1 SV=3
trembl
ID A0A067L6L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02138 PE=4 SV=1
Gene Ontology
ID GO:0005622
description methyltransferase c9orf114

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23620: 197176-197937 , PASA_asmbl_23622: 198824-199796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_230 0.0 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
2 Hb_001998_050 0.0483249402 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
3 Hb_002925_030 0.0634908676 - - 40S ribosomal protein S16B [Hevea brasiliensis]
4 Hb_089839_020 0.0680335227 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
5 Hb_003398_120 0.068658753 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
6 Hb_001505_020 0.0695137741 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
7 Hb_000380_190 0.07261918 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
8 Hb_002375_090 0.0744484767 - - -
9 Hb_001143_080 0.0767440889 - - PREDICTED: F-box protein 7 [Jatropha curcas]
10 Hb_027073_040 0.0768562504 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
11 Hb_003734_140 0.0778914022 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002713_070 0.079449653 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
13 Hb_015175_030 0.0801521508 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
14 Hb_004375_100 0.081314776 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
15 Hb_001242_110 0.0818666596 - - 40S ribosomal protein S18, putative [Ricinus communis]
16 Hb_005618_140 0.0821815067 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
17 Hb_001433_050 0.0830992519 - - 60S ribosomal protein L18, putative [Ricinus communis]
18 Hb_000239_010 0.0836916088 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000574_480 0.0846584026 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
20 Hb_000580_080 0.0849573042 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]

Gene co-expression network

sample Hb_000227_230 Hb_000227_230 Hb_001998_050 Hb_001998_050 Hb_000227_230--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_002925_030--Hb_003398_120 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002713_070 Hb_002713_070 Hb_002925_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_003734_140 Hb_003734_140 Hb_089839_020--Hb_003734_140 Hb_089839_020--Hb_002713_070 Hb_000580_080 Hb_000580_080 Hb_089839_020--Hb_000580_080 Hb_089839_020--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_089839_020--Hb_000136_170 Hb_001248_080 Hb_001248_080 Hb_003398_120--Hb_001248_080 Hb_003398_120--Hb_001998_050 Hb_148930_010 Hb_148930_010 Hb_003398_120--Hb_148930_010 Hb_003398_120--Hb_011311_010 Hb_006816_530 Hb_006816_530 Hb_001505_020--Hb_006816_530 Hb_001505_020--Hb_002713_070 Hb_001505_020--Hb_000136_170 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_001814_050 Hb_001814_050 Hb_001505_020--Hb_001814_050 Hb_002311_350 Hb_002311_350 Hb_000380_190--Hb_002311_350 Hb_001477_110 Hb_001477_110 Hb_000380_190--Hb_001477_110 Hb_000007_100 Hb_000007_100 Hb_000380_190--Hb_000007_100 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.37136 5.32205 3.62549 6.38752 11.1061 15.3205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7023 31.6361 17.2647 11.3136 3.45982

CAGE analysis