Hb_000227_260

Information

Type -
Description -
Location Contig227: 228632-230587
Sequence    

Annotation

kegg
ID rcu:RCOM_0913930
description leucine rich repeat-containing protein, putative
nr
ID XP_012069574.1
description PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
swissprot
ID Q9M651
description RAN GTPase-activating protein 2 OS=Arabidopsis thaliana GN=RANGAP2 PE=1 SV=2
trembl
ID A0A067KYU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02141 PE=4 SV=1
Gene Ontology
ID GO:0012505
description ran gtpase activating protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_260 0.0 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
2 Hb_004374_100 0.1146446006 - - PREDICTED: phosphoglycerate mutase-like protein AT74H [Jatropha curcas]
3 Hb_000280_030 0.1152506222 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 55-like [Jatropha curcas]
4 Hb_000638_270 0.1230517746 - - -
5 Hb_007253_030 0.1342467821 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
6 Hb_000042_310 0.1346711517 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
7 Hb_005977_040 0.1348833496 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
8 Hb_061126_010 0.136874223 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
9 Hb_000705_010 0.142839374 - - hypothetical protein CICLE_v10027296mg [Citrus clementina]
10 Hb_002025_220 0.1461246993 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
11 Hb_107373_010 0.1489292386 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
12 Hb_015824_010 0.149460907 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
13 Hb_005976_090 0.149878379 - - DNA binding protein, putative [Ricinus communis]
14 Hb_080922_010 0.1508734467 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_186844_010 0.1519156629 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
16 Hb_002609_140 0.1526043314 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_003602_030 0.1559621626 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
18 Hb_003536_020 0.1570462859 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
19 Hb_016687_010 0.1575237359 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
20 Hb_000116_090 0.1576612702 - - catalase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000227_260 Hb_000227_260 Hb_004374_100 Hb_004374_100 Hb_000227_260--Hb_004374_100 Hb_000280_030 Hb_000280_030 Hb_000227_260--Hb_000280_030 Hb_000638_270 Hb_000638_270 Hb_000227_260--Hb_000638_270 Hb_007253_030 Hb_007253_030 Hb_000227_260--Hb_007253_030 Hb_000042_310 Hb_000042_310 Hb_000227_260--Hb_000042_310 Hb_005977_040 Hb_005977_040 Hb_000227_260--Hb_005977_040 Hb_004374_100--Hb_000042_310 Hb_004374_100--Hb_000280_030 Hb_015824_010 Hb_015824_010 Hb_004374_100--Hb_015824_010 Hb_004374_100--Hb_000638_270 Hb_000705_010 Hb_000705_010 Hb_004374_100--Hb_000705_010 Hb_144045_010 Hb_144045_010 Hb_004374_100--Hb_144045_010 Hb_000280_030--Hb_000638_270 Hb_000280_030--Hb_000042_310 Hb_000280_030--Hb_015824_010 Hb_000280_030--Hb_000705_010 Hb_002025_220 Hb_002025_220 Hb_000280_030--Hb_002025_220 Hb_000638_270--Hb_002025_220 Hb_000638_270--Hb_000042_310 Hb_003106_160 Hb_003106_160 Hb_000638_270--Hb_003106_160 Hb_002799_060 Hb_002799_060 Hb_007253_030--Hb_002799_060 Hb_001257_110 Hb_001257_110 Hb_007253_030--Hb_001257_110 Hb_001691_170 Hb_001691_170 Hb_007253_030--Hb_001691_170 Hb_007253_030--Hb_005977_040 Hb_003299_060 Hb_003299_060 Hb_007253_030--Hb_003299_060 Hb_000042_310--Hb_015824_010 Hb_000042_310--Hb_144045_010 Hb_000042_310--Hb_000705_010 Hb_002609_140 Hb_002609_140 Hb_005977_040--Hb_002609_140 Hb_074548_010 Hb_074548_010 Hb_005977_040--Hb_074548_010 Hb_000544_070 Hb_000544_070 Hb_005977_040--Hb_000544_070 Hb_000161_010 Hb_000161_010 Hb_005977_040--Hb_000161_010 Hb_005523_040 Hb_005523_040 Hb_005977_040--Hb_005523_040 Hb_005977_040--Hb_001257_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0148006 0.250544 0.984642 0.10242 0.0444961 0.0129863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0848436 1.4396

CAGE analysis