Hb_000227_270

Information

Type transcription factor
Description TF Family: TRAF
Location Contig227: 240268-247341
Sequence    

Annotation

kegg
ID rcu:RCOM_0913950
description protein binding protein, putative
nr
ID XP_012069582.1
description PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
swissprot
ID B9DHT4
description ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2
trembl
ID A0A067L6L9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02143 PE=4 SV=1
Gene Ontology
ID GO:0005886
description arm repeat protein interacting with abf2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23627: 240271-247219 , PASA_asmbl_23629: 242723-243507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_270 0.0 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
2 Hb_007290_030 0.0716734173 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
3 Hb_000352_350 0.0745400183 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
4 Hb_017214_040 0.0761856589 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
5 Hb_023226_070 0.0769501804 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004943_030 0.0773104243 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
7 Hb_000086_500 0.081824186 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_000238_040 0.0827932682 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
9 Hb_003605_050 0.0838263804 - - protein with unknown function [Ricinus communis]
10 Hb_008387_010 0.0845313889 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
11 Hb_003894_120 0.0846738888 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
12 Hb_001579_330 0.085002511 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
13 Hb_001754_030 0.0883270946 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
14 Hb_000048_080 0.0884359548 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
15 Hb_000089_210 0.0885040582 - - unknown [Medicago truncatula]
16 Hb_000130_420 0.0891129402 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
17 Hb_001300_010 0.0907957356 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
18 Hb_001951_200 0.0908686943 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
19 Hb_001500_060 0.0913400978 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
20 Hb_001761_120 0.0919785794 - - hypothetical protein JCGZ_22564 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_270 Hb_000227_270 Hb_007290_030 Hb_007290_030 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_023226_070 Hb_023226_070 Hb_000227_270--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_000227_270--Hb_004943_030 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_007290_030--Hb_000352_350 Hb_001761_120 Hb_001761_120 Hb_007290_030--Hb_001761_120 Hb_001776_060 Hb_001776_060 Hb_007290_030--Hb_001776_060 Hb_000239_060 Hb_000239_060 Hb_007290_030--Hb_000239_060 Hb_001635_040 Hb_001635_040 Hb_007290_030--Hb_001635_040 Hb_000352_350--Hb_000239_060 Hb_001005_020 Hb_001005_020 Hb_000352_350--Hb_001005_020 Hb_000144_070 Hb_000144_070 Hb_000352_350--Hb_000144_070 Hb_000089_210 Hb_000089_210 Hb_000352_350--Hb_000089_210 Hb_000179_190 Hb_000179_190 Hb_017214_040--Hb_000179_190 Hb_008387_010 Hb_008387_010 Hb_017214_040--Hb_008387_010 Hb_017214_040--Hb_023226_070 Hb_000445_060 Hb_000445_060 Hb_017214_040--Hb_000445_060 Hb_000110_350 Hb_000110_350 Hb_017214_040--Hb_000110_350 Hb_060094_020 Hb_060094_020 Hb_023226_070--Hb_060094_020 Hb_000094_090 Hb_000094_090 Hb_023226_070--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_023226_070--Hb_001754_030 Hb_023226_070--Hb_000445_060 Hb_000723_110 Hb_000723_110 Hb_023226_070--Hb_000723_110 Hb_002811_040 Hb_002811_040 Hb_023226_070--Hb_002811_040 Hb_004943_030--Hb_060094_020 Hb_003605_050 Hb_003605_050 Hb_004943_030--Hb_003605_050 Hb_008695_090 Hb_008695_090 Hb_004943_030--Hb_008695_090 Hb_004943_030--Hb_001754_030 Hb_004943_030--Hb_023226_070 Hb_008062_050 Hb_008062_050 Hb_000086_500--Hb_008062_050 Hb_128548_010 Hb_128548_010 Hb_000086_500--Hb_128548_010 Hb_002483_010 Hb_002483_010 Hb_000086_500--Hb_002483_010 Hb_008568_020 Hb_008568_020 Hb_000086_500--Hb_008568_020 Hb_001584_350 Hb_001584_350 Hb_000086_500--Hb_001584_350 Hb_000645_170 Hb_000645_170 Hb_000086_500--Hb_000645_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3168 32.353 37.9419 23.3972 15.2235 15.904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9362 10.8097 14.85 12.9871 18.4044

CAGE analysis