Hb_000227_290

Information

Type -
Description -
Location Contig227: 255294-256013
Sequence    

Annotation

kegg
ID rcu:RCOM_0913970
description hypothetical protein
nr
ID XP_012069585.1
description PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02145 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_290 0.0 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
2 Hb_001357_110 0.0551843955 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
3 Hb_000664_010 0.0574039108 - - PREDICTED: histidine-containing phosphotransfer protein 4-like [Jatropha curcas]
4 Hb_029584_030 0.0593666897 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
5 Hb_005665_100 0.0607109688 - - PREDICTED: RING-H2 finger protein ATL63-like [Populus euphratica]
6 Hb_005614_060 0.0625018941 - - Uncharacterized protein TCM_019750 [Theobroma cacao]
7 Hb_001496_150 0.0650784016 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
8 Hb_011224_030 0.0663733825 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
9 Hb_177208_010 0.0675109968 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
10 Hb_002471_310 0.0707256299 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
11 Hb_002308_040 0.0719536185 - - methyladenine glycosylase family protein [Populus trichocarpa]
12 Hb_004225_010 0.0815634719 - - -
13 Hb_000049_190 0.0821753564 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_000310_050 0.0841780959 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_004440_030 0.0844144962 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
16 Hb_018910_010 0.0861576655 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
17 Hb_014834_100 0.0871443732 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
18 Hb_005653_050 0.0882981437 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
19 Hb_150179_010 0.0908321936 - - hypothetical protein JCGZ_21079 [Jatropha curcas]
20 Hb_005295_030 0.0934387445 - - PREDICTED: uncharacterized protein LOC105645488 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_290 Hb_000227_290 Hb_001357_110 Hb_001357_110 Hb_000227_290--Hb_001357_110 Hb_000664_010 Hb_000664_010 Hb_000227_290--Hb_000664_010 Hb_029584_030 Hb_029584_030 Hb_000227_290--Hb_029584_030 Hb_005665_100 Hb_005665_100 Hb_000227_290--Hb_005665_100 Hb_005614_060 Hb_005614_060 Hb_000227_290--Hb_005614_060 Hb_001496_150 Hb_001496_150 Hb_000227_290--Hb_001496_150 Hb_002263_050 Hb_002263_050 Hb_001357_110--Hb_002263_050 Hb_000614_300 Hb_000614_300 Hb_001357_110--Hb_000614_300 Hb_002308_040 Hb_002308_040 Hb_001357_110--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_001357_110--Hb_002471_310 Hb_001357_110--Hb_005665_100 Hb_000664_010--Hb_029584_030 Hb_000664_010--Hb_005665_100 Hb_000664_010--Hb_002471_310 Hb_011224_030 Hb_011224_030 Hb_000664_010--Hb_011224_030 Hb_000664_010--Hb_002308_040 Hb_150179_010 Hb_150179_010 Hb_000664_010--Hb_150179_010 Hb_029584_030--Hb_150179_010 Hb_029584_030--Hb_005665_100 Hb_029584_030--Hb_011224_030 Hb_029584_030--Hb_002471_310 Hb_018910_010 Hb_018910_010 Hb_005665_100--Hb_018910_010 Hb_000049_190 Hb_000049_190 Hb_005665_100--Hb_000049_190 Hb_005665_100--Hb_005614_060 Hb_005665_100--Hb_002471_310 Hb_005665_100--Hb_002308_040 Hb_005614_060--Hb_000049_190 Hb_004440_030 Hb_004440_030 Hb_005614_060--Hb_004440_030 Hb_005614_060--Hb_000664_010 Hb_005614_060--Hb_029584_030 Hb_153258_030 Hb_153258_030 Hb_001496_150--Hb_153258_030 Hb_001496_150--Hb_018910_010 Hb_001496_150--Hb_000049_190 Hb_001496_150--Hb_005665_100 Hb_001568_040 Hb_001568_040 Hb_001496_150--Hb_001568_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0341933 1.41621 8.0625 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0248598 1.45679

CAGE analysis