Hb_000227_380

Information

Type -
Description -
Location Contig227: 341957-349369
Sequence    

Annotation

kegg
ID rcu:RCOM_0677530
description ATP binding protein, putative
nr
ID XP_012069600.1
description PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
swissprot
ID Q94KE2
description Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2
trembl
ID A0A067KVC0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02154 PE=4 SV=1
Gene Ontology
ID GO:0009416
description protein time for coffee isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23651: 342013-348979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_380 0.0 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
2 Hb_003866_020 0.055467721 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007849_020 0.0575263259 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
4 Hb_175338_020 0.062476285 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
5 Hb_000239_070 0.0637181961 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X1 [Jatropha curcas]
6 Hb_000002_440 0.0719869869 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
7 Hb_001080_270 0.0724337409 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
8 Hb_002471_210 0.0727842621 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
9 Hb_006816_300 0.0737820388 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
10 Hb_000594_020 0.074518545 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
11 Hb_000023_060 0.0776940196 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
12 Hb_000997_030 0.0783686887 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
13 Hb_010080_060 0.0788004681 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_002105_080 0.0788055129 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000813_100 0.0812271801 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
16 Hb_007885_070 0.0813830081 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
17 Hb_000529_260 0.0827548129 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
18 Hb_000264_100 0.0828778951 - - conserved hypothetical protein [Ricinus communis]
19 Hb_015763_020 0.0828911307 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
20 Hb_002883_010 0.0828931553 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_380 Hb_000227_380 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_007849_020 Hb_007849_020 Hb_000227_380--Hb_007849_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000002_440 Hb_000002_440 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_006588_050 Hb_006588_050 Hb_003866_020--Hb_006588_050 Hb_006816_300 Hb_006816_300 Hb_003866_020--Hb_006816_300 Hb_004899_070 Hb_004899_070 Hb_003866_020--Hb_004899_070 Hb_003866_020--Hb_000239_070 Hb_000340_160 Hb_000340_160 Hb_003866_020--Hb_000340_160 Hb_007849_020--Hb_006816_300 Hb_002471_210 Hb_002471_210 Hb_007849_020--Hb_002471_210 Hb_000250_070 Hb_000250_070 Hb_007849_020--Hb_000250_070 Hb_002105_080 Hb_002105_080 Hb_007849_020--Hb_002105_080 Hb_002291_070 Hb_002291_070 Hb_007849_020--Hb_002291_070 Hb_004162_280 Hb_004162_280 Hb_175338_020--Hb_004162_280 Hb_000424_010 Hb_000424_010 Hb_175338_020--Hb_000424_010 Hb_002652_040 Hb_002652_040 Hb_175338_020--Hb_002652_040 Hb_000529_260 Hb_000529_260 Hb_175338_020--Hb_000529_260 Hb_175338_020--Hb_007849_020 Hb_000239_070--Hb_000340_160 Hb_002883_010 Hb_002883_010 Hb_000239_070--Hb_002883_010 Hb_000331_190 Hb_000331_190 Hb_000239_070--Hb_000331_190 Hb_000239_070--Hb_175338_020 Hb_002235_320 Hb_002235_320 Hb_000239_070--Hb_002235_320 Hb_025477_060 Hb_025477_060 Hb_000002_440--Hb_025477_060 Hb_000813_100 Hb_000813_100 Hb_000002_440--Hb_000813_100 Hb_000096_180 Hb_000096_180 Hb_000002_440--Hb_000096_180 Hb_000594_020 Hb_000594_020 Hb_000002_440--Hb_000594_020 Hb_000002_440--Hb_002883_010 Hb_004718_010 Hb_004718_010 Hb_001080_270--Hb_004718_010 Hb_002411_120 Hb_002411_120 Hb_001080_270--Hb_002411_120 Hb_000997_030 Hb_000997_030 Hb_001080_270--Hb_000997_030 Hb_000959_040 Hb_000959_040 Hb_001080_270--Hb_000959_040 Hb_001080_270--Hb_000813_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.9317 58.9879 14.3801 13.4919 83.1216 87.3637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7661 18.9253 28.8815 39.9091 20.3187

CAGE analysis