Hb_000227_390

Information

Type -
Description -
Location Contig227: 353702-360972
Sequence    

Annotation

kegg
ID rcu:RCOM_0677740
description vacuole membrane protein, putative
nr
ID XP_012069605.1
description PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
swissprot
ID Q5XF36
description Vacuole membrane protein KMS1 OS=Arabidopsis thaliana GN=KMS1 PE=1 SV=1
trembl
ID A0A067KVI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02155 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23652: 353707-360955 , PASA_asmbl_23653: 359960-360502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_390 0.0 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
2 Hb_001279_190 0.0716168196 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
3 Hb_007483_070 0.0845578084 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
4 Hb_000120_810 0.0872560606 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_004079_130 0.0879893064 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
6 Hb_003540_050 0.088222174 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
7 Hb_000703_190 0.0898413394 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
8 Hb_007850_030 0.0903901947 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
9 Hb_002687_180 0.0904604898 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
10 Hb_001250_050 0.0911980213 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
11 Hb_000017_260 0.0922679547 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
12 Hb_003498_100 0.0942088677 - - component of oligomeric golgi complex, putative [Ricinus communis]
13 Hb_053709_050 0.0957509937 - - PREDICTED: nudix hydrolase 23, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000476_060 0.0959438333 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
15 Hb_006120_050 0.096950632 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
16 Hb_000120_890 0.0971659022 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
17 Hb_001799_160 0.0979908602 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_001482_050 0.0992557947 - - COR413-PM2, putative [Ricinus communis]
19 Hb_001227_120 0.0999679598 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
20 Hb_003626_070 0.1004567333 - - PREDICTED: golgin candidate 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_390 Hb_000227_390 Hb_001279_190 Hb_001279_190 Hb_000227_390--Hb_001279_190 Hb_007483_070 Hb_007483_070 Hb_000227_390--Hb_007483_070 Hb_000120_810 Hb_000120_810 Hb_000227_390--Hb_000120_810 Hb_004079_130 Hb_004079_130 Hb_000227_390--Hb_004079_130 Hb_003540_050 Hb_003540_050 Hb_000227_390--Hb_003540_050 Hb_000703_190 Hb_000703_190 Hb_000227_390--Hb_000703_190 Hb_001279_190--Hb_007483_070 Hb_002687_180 Hb_002687_180 Hb_001279_190--Hb_002687_180 Hb_004228_120 Hb_004228_120 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001250_050 Hb_001250_050 Hb_001279_190--Hb_001250_050 Hb_001227_120 Hb_001227_120 Hb_001279_190--Hb_001227_120 Hb_001504_010 Hb_001504_010 Hb_007483_070--Hb_001504_010 Hb_008304_020 Hb_008304_020 Hb_007483_070--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_007483_070--Hb_000815_300 Hb_000120_890 Hb_000120_890 Hb_007483_070--Hb_000120_890 Hb_007483_070--Hb_011716_010 Hb_000704_030 Hb_000704_030 Hb_000120_810--Hb_000704_030 Hb_026198_010 Hb_026198_010 Hb_000120_810--Hb_026198_010 Hb_000120_810--Hb_004079_130 Hb_000603_160 Hb_000603_160 Hb_000120_810--Hb_000603_160 Hb_189216_010 Hb_189216_010 Hb_000120_810--Hb_189216_010 Hb_000680_120 Hb_000680_120 Hb_000120_810--Hb_000680_120 Hb_004079_130--Hb_026198_010 Hb_001482_050 Hb_001482_050 Hb_004079_130--Hb_001482_050 Hb_004079_130--Hb_000704_030 Hb_012092_050 Hb_012092_050 Hb_004079_130--Hb_012092_050 Hb_000072_300 Hb_000072_300 Hb_003540_050--Hb_000072_300 Hb_002686_080 Hb_002686_080 Hb_003540_050--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_003540_050--Hb_005064_010 Hb_001053_190 Hb_001053_190 Hb_003540_050--Hb_001053_190 Hb_003540_050--Hb_001279_190 Hb_002740_080 Hb_002740_080 Hb_003540_050--Hb_002740_080 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000317_040 Hb_000317_040 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.85425 10.7721 21.1832 20.2862 6.00764 5.96263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3896 6.5294 7.83677 11.1206 10.8065

CAGE analysis