Hb_000227_410

Information

Type -
Description -
Location Contig227: 374976-376544
Sequence    

Annotation

kegg
ID rcu:RCOM_0677770
description Protein SSM1, putative
nr
ID XP_012069607.1
description PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
swissprot
ID Q09893
description Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1
trembl
ID A0A067L7V3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02157 PE=4 SV=1
Gene Ontology
ID GO:0016787
description phosphatase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_410 0.0 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
2 Hb_000904_090 0.0546899778 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
3 Hb_027214_060 0.0608251759 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
4 Hb_002475_110 0.0690640368 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
5 Hb_000347_360 0.0696443169 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
6 Hb_031862_150 0.0711099207 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_048538_010 0.0774870874 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
8 Hb_147137_020 0.0787001839 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
9 Hb_073870_020 0.0802552506 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
10 Hb_013726_100 0.091949576 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
11 Hb_104855_020 0.0933278271 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_009683_060 0.0954266998 - - -
13 Hb_000086_600 0.0983312716 - - -
14 Hb_009707_010 0.0983618874 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
15 Hb_114932_010 0.102209603 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_025477_020 0.1055401139 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
17 Hb_025477_030 0.1059518714 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
18 Hb_001623_020 0.106697836 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
19 Hb_010417_120 0.109608146 - - conserved hypothetical protein [Ricinus communis]
20 Hb_008579_010 0.1097950342 - - hypothetical protein JCGZ_01311 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_410 Hb_000227_410 Hb_000904_090 Hb_000904_090 Hb_000227_410--Hb_000904_090 Hb_027214_060 Hb_027214_060 Hb_000227_410--Hb_027214_060 Hb_002475_110 Hb_002475_110 Hb_000227_410--Hb_002475_110 Hb_000347_360 Hb_000347_360 Hb_000227_410--Hb_000347_360 Hb_031862_150 Hb_031862_150 Hb_000227_410--Hb_031862_150 Hb_048538_010 Hb_048538_010 Hb_000227_410--Hb_048538_010 Hb_009683_060 Hb_009683_060 Hb_000904_090--Hb_009683_060 Hb_104855_020 Hb_104855_020 Hb_000904_090--Hb_104855_020 Hb_000904_090--Hb_048538_010 Hb_000904_090--Hb_002475_110 Hb_167802_010 Hb_167802_010 Hb_000904_090--Hb_167802_010 Hb_027214_060--Hb_002475_110 Hb_073870_020 Hb_073870_020 Hb_027214_060--Hb_073870_020 Hb_147137_020 Hb_147137_020 Hb_027214_060--Hb_147137_020 Hb_027214_060--Hb_000904_090 Hb_027214_060--Hb_000347_360 Hb_013726_100 Hb_013726_100 Hb_002475_110--Hb_013726_100 Hb_025477_030 Hb_025477_030 Hb_002475_110--Hb_025477_030 Hb_001623_020 Hb_001623_020 Hb_002475_110--Hb_001623_020 Hb_000347_360--Hb_073870_020 Hb_000347_360--Hb_048538_010 Hb_002849_030 Hb_002849_030 Hb_000347_360--Hb_002849_030 Hb_000322_020 Hb_000322_020 Hb_000347_360--Hb_000322_020 Hb_031862_150--Hb_048538_010 Hb_022768_010 Hb_022768_010 Hb_031862_150--Hb_022768_010 Hb_031862_150--Hb_147137_020 Hb_000086_600 Hb_000086_600 Hb_031862_150--Hb_000086_600 Hb_142691_010 Hb_142691_010 Hb_031862_150--Hb_142691_010 Hb_048538_010--Hb_002849_030 Hb_048538_010--Hb_073870_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12202 95.7518 10.2437 13.4678 0 0.0492552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0440201 0 0.478944 1.34272

CAGE analysis