Hb_000227_420

Information

Type -
Description -
Location Contig227: 379527-382400
Sequence    

Annotation

kegg
ID rcu:RCOM_0677780
description spermine synthase, putative (EC:2.5.1.16)
nr
ID XP_012069608.1
description PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
swissprot
ID Q9S7X6
description Thermospermine synthase ACAULIS5 OS=Arabidopsis thaliana GN=ACL5 PE=1 SV=1
trembl
ID A0A067L6N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02158 PE=3 SV=1
Gene Ontology
ID GO:0004766
description thermospermine synthase acaulis5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_420 0.0 - - PREDICTED: thermospermine synthase ACAULIS5-like [Jatropha curcas]
2 Hb_000115_170 0.1236336083 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
3 Hb_043629_020 0.1327480114 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
4 Hb_002232_200 0.2182994723 - - PREDICTED: sugar carrier protein C-like [Jatropha curcas]
5 Hb_003992_260 0.2194883221 - - PREDICTED: 26.5 kDa heat shock protein, mitochondrial [Jatropha curcas]
6 Hb_007382_020 0.2242073389 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
7 Hb_003462_010 0.2349843835 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_005730_080 0.2384962096 - - PREDICTED: 17.6 kDa class I heat shock protein-like [Solanum lycopersicum]
9 Hb_005116_020 0.2396179963 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
10 Hb_003320_030 0.2433960325 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000005_040 0.251368647 - - PREDICTED: histone H2B.2 [Jatropha curcas]
12 Hb_002983_100 0.2534289603 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
13 Hb_025194_030 0.2684240187 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
14 Hb_006846_090 0.2689002648 - - PREDICTED: uncharacterized protein LOC105648695 [Jatropha curcas]
15 Hb_000345_120 0.2707863373 - - PREDICTED: mediator of RNA polymerase II transcription subunit 37a [Jatropha curcas]
16 Hb_001142_020 0.2721718359 - - -
17 Hb_155911_010 0.2731985896 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
18 Hb_000123_390 0.2747508712 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002022_050 0.2748619183 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
20 Hb_000362_230 0.2756774616 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000227_420 Hb_000227_420 Hb_000115_170 Hb_000115_170 Hb_000227_420--Hb_000115_170 Hb_043629_020 Hb_043629_020 Hb_000227_420--Hb_043629_020 Hb_002232_200 Hb_002232_200 Hb_000227_420--Hb_002232_200 Hb_003992_260 Hb_003992_260 Hb_000227_420--Hb_003992_260 Hb_007382_020 Hb_007382_020 Hb_000227_420--Hb_007382_020 Hb_003462_010 Hb_003462_010 Hb_000227_420--Hb_003462_010 Hb_000115_170--Hb_043629_020 Hb_000115_170--Hb_002232_200 Hb_005116_020 Hb_005116_020 Hb_000115_170--Hb_005116_020 Hb_000115_170--Hb_007382_020 Hb_005730_080 Hb_005730_080 Hb_000115_170--Hb_005730_080 Hb_043629_020--Hb_003462_010 Hb_043629_020--Hb_003992_260 Hb_043629_020--Hb_005116_020 Hb_043629_020--Hb_002232_200 Hb_000005_040 Hb_000005_040 Hb_002232_200--Hb_000005_040 Hb_002900_060 Hb_002900_060 Hb_002232_200--Hb_002900_060 Hb_002232_200--Hb_005730_080 Hb_002022_050 Hb_002022_050 Hb_002232_200--Hb_002022_050 Hb_002260_190 Hb_002260_190 Hb_002232_200--Hb_002260_190 Hb_001142_020 Hb_001142_020 Hb_002232_200--Hb_001142_020 Hb_006846_100 Hb_006846_100 Hb_003992_260--Hb_006846_100 Hb_004846_180 Hb_004846_180 Hb_003992_260--Hb_004846_180 Hb_001723_110 Hb_001723_110 Hb_003992_260--Hb_001723_110 Hb_003992_260--Hb_007382_020 Hb_006846_090 Hb_006846_090 Hb_003992_260--Hb_006846_090 Hb_025194_030 Hb_025194_030 Hb_007382_020--Hb_025194_030 Hb_007382_020--Hb_004846_180 Hb_008749_050 Hb_008749_050 Hb_007382_020--Hb_008749_050 Hb_184326_010 Hb_184326_010 Hb_007382_020--Hb_184326_010 Hb_168978_040 Hb_168978_040 Hb_007382_020--Hb_168978_040 Hb_003462_010--Hb_000115_170 Hb_000345_120 Hb_000345_120 Hb_003462_010--Hb_000345_120 Hb_003462_010--Hb_002232_200 Hb_027751_050 Hb_027751_050 Hb_003462_010--Hb_027751_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.399895 0.336097 0.016407 0.122427 10.5056 2.43338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.301057 0.157855 0.363382 0.349077 0

CAGE analysis