Hb_000228_060

Information

Type -
Description -
Location Contig228: 113730-124342
Sequence    

Annotation

kegg
ID rcu:RCOM_1013810
description hypothetical protein
nr
ID KDP21061.1
description hypothetical protein JCGZ_21532 [Jatropha curcas]
swissprot
ID P16128
description Uncharacterized protein At4g18490 OS=Arabidopsis thaliana GN=At4g18490 PE=2 SV=3
trembl
ID A0A067JB78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21532 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23766: 113769-114763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000228_060 0.0 - - hypothetical protein JCGZ_21532 [Jatropha curcas]
2 Hb_093666_010 0.1107374601 - - BnaC05g06620D [Brassica napus]
3 Hb_007821_030 0.1156145316 - - 5'-nucleotidase domain-containing [Gossypium arboreum]
4 Hb_000907_180 0.1161519736 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
5 Hb_001541_050 0.1166204836 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
6 Hb_000237_200 0.1174234398 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
7 Hb_012506_060 0.118228149 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
8 Hb_021374_030 0.119051064 - - hypothetical protein RCOM_0351490 [Ricinus communis]
9 Hb_065525_080 0.1197051548 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
10 Hb_000086_080 0.1203310682 - - conserved hypothetical protein [Ricinus communis]
11 Hb_077549_010 0.1204244215 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
12 Hb_155215_020 0.1208214244 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
13 Hb_000061_180 0.1213961925 - - exonuclease, putative [Ricinus communis]
14 Hb_001769_170 0.1250477898 - - 50S ribosomal protein L31, putative [Ricinus communis]
15 Hb_029351_010 0.1265858116 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_002157_120 0.1268639267 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000840_200 0.1272305645 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
18 Hb_157023_020 0.1286489855 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000212_120 0.1294721461 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
20 Hb_002471_250 0.1296831123 - - Tapt1/CMV receptor, putative isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000228_060 Hb_000228_060 Hb_093666_010 Hb_093666_010 Hb_000228_060--Hb_093666_010 Hb_007821_030 Hb_007821_030 Hb_000228_060--Hb_007821_030 Hb_000907_180 Hb_000907_180 Hb_000228_060--Hb_000907_180 Hb_001541_050 Hb_001541_050 Hb_000228_060--Hb_001541_050 Hb_000237_200 Hb_000237_200 Hb_000228_060--Hb_000237_200 Hb_012506_060 Hb_012506_060 Hb_000228_060--Hb_012506_060 Hb_065525_080 Hb_065525_080 Hb_093666_010--Hb_065525_080 Hb_113853_010 Hb_113853_010 Hb_093666_010--Hb_113853_010 Hb_030414_040 Hb_030414_040 Hb_093666_010--Hb_030414_040 Hb_001623_270 Hb_001623_270 Hb_093666_010--Hb_001623_270 Hb_021374_030 Hb_021374_030 Hb_093666_010--Hb_021374_030 Hb_183433_010 Hb_183433_010 Hb_093666_010--Hb_183433_010 Hb_002173_070 Hb_002173_070 Hb_007821_030--Hb_002173_070 Hb_005288_130 Hb_005288_130 Hb_007821_030--Hb_005288_130 Hb_001051_050 Hb_001051_050 Hb_007821_030--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_007821_030--Hb_003878_150 Hb_000035_260 Hb_000035_260 Hb_007821_030--Hb_000035_260 Hb_000061_180 Hb_000061_180 Hb_007821_030--Hb_000061_180 Hb_003266_030 Hb_003266_030 Hb_000907_180--Hb_003266_030 Hb_004452_120 Hb_004452_120 Hb_000907_180--Hb_004452_120 Hb_001882_010 Hb_001882_010 Hb_000907_180--Hb_001882_010 Hb_005127_030 Hb_005127_030 Hb_000907_180--Hb_005127_030 Hb_001022_030 Hb_001022_030 Hb_000907_180--Hb_001022_030 Hb_012150_030 Hb_012150_030 Hb_000907_180--Hb_012150_030 Hb_001541_050--Hb_065525_080 Hb_005494_010 Hb_005494_010 Hb_001541_050--Hb_005494_010 Hb_001541_050--Hb_093666_010 Hb_004096_240 Hb_004096_240 Hb_001541_050--Hb_004096_240 Hb_001541_050--Hb_001623_270 Hb_002876_300 Hb_002876_300 Hb_001541_050--Hb_002876_300 Hb_000237_200--Hb_021374_030 Hb_000035_090 Hb_000035_090 Hb_000237_200--Hb_000035_090 Hb_000300_470 Hb_000300_470 Hb_000237_200--Hb_000300_470 Hb_000237_200--Hb_002876_300 Hb_114310_070 Hb_114310_070 Hb_000237_200--Hb_114310_070 Hb_002774_190 Hb_002774_190 Hb_000237_200--Hb_002774_190 Hb_069662_010 Hb_069662_010 Hb_012506_060--Hb_069662_010 Hb_000122_070 Hb_000122_070 Hb_012506_060--Hb_000122_070 Hb_004531_140 Hb_004531_140 Hb_012506_060--Hb_004531_140 Hb_018272_020 Hb_018272_020 Hb_012506_060--Hb_018272_020 Hb_001769_170 Hb_001769_170 Hb_012506_060--Hb_001769_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0848365 0.0695087 0.166161 0.152186 0.0354527 0.137937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.066002 0.142827 0.0495684 0.0669995 0.165827

CAGE analysis