Hb_000229_020

Information

Type -
Description -
Location Contig229: 22119-23990
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14130g
description POPTRDRAFT_571776; pentatricopeptide repeat-containing family protein
nr
ID XP_012088342.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
swissprot
ID Q9LR69
description Pentatricopeptide repeat-containing protein At1g03540 OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
trembl
ID A0A067JXD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25836 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000229_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
2 Hb_010172_090 0.0452679196 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_012807_050 0.0742071282 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
4 Hb_045793_010 0.0815563954 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
5 Hb_015807_070 0.0816668112 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
6 Hb_000827_070 0.0873033204 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
7 Hb_006316_040 0.087950914 - - PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Jatropha curcas]
8 Hb_001021_170 0.0888457691 - - PREDICTED: uncharacterized protein LOC105642474 [Jatropha curcas]
9 Hb_007416_180 0.0910762619 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
10 Hb_001584_150 0.0913608849 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
11 Hb_008500_010 0.09140456 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
12 Hb_004767_050 0.0922941061 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
13 Hb_006847_040 0.0940389644 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
14 Hb_001516_100 0.0944600551 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
15 Hb_076693_020 0.0962011023 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
16 Hb_000181_070 0.0966544307 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000174_220 0.0967031608 - - cohesin subunit rad21, putative [Ricinus communis]
18 Hb_009564_030 0.0967991094 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
19 Hb_011491_010 0.0983955489 - - Protein YME1, putative [Ricinus communis]
20 Hb_000203_160 0.0993515794 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000229_020 Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_000229_020--Hb_010172_090 Hb_012807_050 Hb_012807_050 Hb_000229_020--Hb_012807_050 Hb_045793_010 Hb_045793_010 Hb_000229_020--Hb_045793_010 Hb_015807_070 Hb_015807_070 Hb_000229_020--Hb_015807_070 Hb_000827_070 Hb_000827_070 Hb_000229_020--Hb_000827_070 Hb_006316_040 Hb_006316_040 Hb_000229_020--Hb_006316_040 Hb_010172_090--Hb_006316_040 Hb_008500_010 Hb_008500_010 Hb_010172_090--Hb_008500_010 Hb_010172_090--Hb_012807_050 Hb_001584_150 Hb_001584_150 Hb_010172_090--Hb_001584_150 Hb_004767_050 Hb_004767_050 Hb_010172_090--Hb_004767_050 Hb_004785_060 Hb_004785_060 Hb_012807_050--Hb_004785_060 Hb_076693_020 Hb_076693_020 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_012807_050--Hb_004767_050 Hb_000025_360 Hb_000025_360 Hb_045793_010--Hb_000025_360 Hb_045793_010--Hb_000827_070 Hb_045793_010--Hb_076693_020 Hb_006847_040 Hb_006847_040 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_015807_070--Hb_000174_220 Hb_015807_070--Hb_001021_170 Hb_007416_180 Hb_007416_180 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_005188_050 Hb_005188_050 Hb_000827_070--Hb_005188_050 Hb_000487_290 Hb_000487_290 Hb_000827_070--Hb_000487_290 Hb_002477_030 Hb_002477_030 Hb_000827_070--Hb_002477_030 Hb_120327_010 Hb_120327_010 Hb_000827_070--Hb_120327_010 Hb_001736_040 Hb_001736_040 Hb_000827_070--Hb_001736_040 Hb_006316_040--Hb_008500_010 Hb_000453_170 Hb_000453_170 Hb_006316_040--Hb_000453_170 Hb_011316_050 Hb_011316_050 Hb_006316_040--Hb_011316_050 Hb_006316_040--Hb_000827_070 Hb_006316_040--Hb_005188_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09354 1.06325 0.221486 0.311484 0.59457 0.931122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.55874 0.76456 0.868296 0.578313 0.483756

CAGE analysis