Hb_000229_030

Information

Type -
Description -
Location Contig229: 28305-30512
Sequence    

Annotation

kegg
ID rcu:RCOM_1176190
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012088341.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Jatropha curcas]
swissprot
ID Q9C9U0
description Pentatricopeptide repeat-containing protein At1g73710 OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
trembl
ID A0A067JMZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25835 PE=4 SV=1
Gene Ontology
ID GO:0016021
description pentatricopeptide repeat-containing protein at1g73710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23877: 29243-29421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000229_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Jatropha curcas]
2 Hb_000890_050 0.0801216669 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
3 Hb_012656_030 0.0974916623 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
4 Hb_004143_130 0.0998343571 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
5 Hb_001862_180 0.1028850928 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
6 Hb_005699_090 0.1030161262 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
7 Hb_006472_020 0.104268063 - - heat shock protein [Cicer arietinum]
8 Hb_000139_090 0.1044509518 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
9 Hb_015807_070 0.1050525341 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
10 Hb_001205_230 0.1052054777 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
11 Hb_003440_050 0.1072844607 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
12 Hb_000803_260 0.1086682725 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
13 Hb_000229_020 0.1099832258 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
14 Hb_001247_070 0.1110629169 - - PREDICTED: pentatricopeptide repeat-containing protein At1g56690, mitochondrial [Jatropha curcas]
15 Hb_000616_020 0.1111846572 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000318_390 0.1126134989 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
17 Hb_003544_180 0.1132790301 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
18 Hb_000264_320 0.113482841 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
19 Hb_009486_200 0.1137222171 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
20 Hb_001700_040 0.1138953072 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]

Gene co-expression network

sample Hb_000229_030 Hb_000229_030 Hb_000890_050 Hb_000890_050 Hb_000229_030--Hb_000890_050 Hb_012656_030 Hb_012656_030 Hb_000229_030--Hb_012656_030 Hb_004143_130 Hb_004143_130 Hb_000229_030--Hb_004143_130 Hb_001862_180 Hb_001862_180 Hb_000229_030--Hb_001862_180 Hb_005699_090 Hb_005699_090 Hb_000229_030--Hb_005699_090 Hb_006472_020 Hb_006472_020 Hb_000229_030--Hb_006472_020 Hb_009767_080 Hb_009767_080 Hb_000890_050--Hb_009767_080 Hb_000890_050--Hb_004143_130 Hb_000270_670 Hb_000270_670 Hb_000890_050--Hb_000270_670 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000318_390 Hb_000318_390 Hb_000890_050--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_000890_050--Hb_001967_030 Hb_008500_010 Hb_008500_010 Hb_012656_030--Hb_008500_010 Hb_014267_010 Hb_014267_010 Hb_012656_030--Hb_014267_010 Hb_012656_030--Hb_000318_390 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_003440_050 Hb_003440_050 Hb_012656_030--Hb_003440_050 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_003203_030 Hb_003203_030 Hb_001862_180--Hb_003203_030 Hb_001205_230 Hb_001205_230 Hb_001862_180--Hb_001205_230 Hb_003910_060 Hb_003910_060 Hb_001862_180--Hb_003910_060 Hb_000803_260 Hb_000803_260 Hb_001862_180--Hb_000803_260 Hb_000388_090 Hb_000388_090 Hb_001862_180--Hb_000388_090 Hb_001329_140 Hb_001329_140 Hb_001862_180--Hb_001329_140 Hb_005699_090--Hb_000035_290 Hb_005699_090--Hb_001268_350 Hb_000563_640 Hb_000563_640 Hb_005699_090--Hb_000563_640 Hb_002784_110 Hb_002784_110 Hb_005699_090--Hb_002784_110 Hb_003544_180 Hb_003544_180 Hb_005699_090--Hb_003544_180 Hb_025194_040 Hb_025194_040 Hb_005699_090--Hb_025194_040 Hb_006472_020--Hb_003910_060 Hb_006472_020--Hb_000890_050 Hb_000189_110 Hb_000189_110 Hb_006472_020--Hb_000189_110 Hb_006472_020--Hb_001862_180 Hb_001268_380 Hb_001268_380 Hb_006472_020--Hb_001268_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.25505 3.52205 1.02348 0.923484 2.12601 2.92316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88176 1.62397 3.38999 2.86683 3.10408

CAGE analysis