Hb_000229_040

Information

Type -
Description -
Location Contig229: 32763-38666
Sequence    

Annotation

kegg
ID tcc:TCM_007982
description Secretory carrier membrane protein (SCAMP) family protein isoform 2
nr
ID XP_007043516.1
description Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
swissprot
ID Q9SKT3
description Secretory carrier-associated membrane protein 1 OS=Arabidopsis thaliana GN=SCAMP1 PE=2 SV=1
trembl
ID A0A061E3Y4
description Secretory carrier membrane protein (SCAMP) family protein isoform 2 OS=Theobroma cacao GN=TCM_007982 PE=4 SV=1
Gene Ontology
ID GO:0016021
description secretory carrier-associated membrane protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23879: 32813-38398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000229_040 0.0 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
2 Hb_021409_020 0.0670512933 - - PREDICTED: protein yippee-like At4g27745 [Malus domestica]
3 Hb_003195_060 0.0842957196 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
4 Hb_168000_010 0.0874964185 - - Calcium-dependent lipid-binding family protein isoform 2 [Theobroma cacao]
5 Hb_004545_060 0.0929148696 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
6 Hb_000045_090 0.0955215796 - - PREDICTED: syntaxin-31 [Jatropha curcas]
7 Hb_022250_130 0.0955587931 - - inositol hexaphosphate kinase, putative [Ricinus communis]
8 Hb_002217_310 0.1013879507 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
9 Hb_004072_020 0.1029927308 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
10 Hb_003195_070 0.1035882121 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_002232_100 0.1040606837 - - vacuolar ATPase F subunit [Hevea brasiliensis]
12 Hb_004976_030 0.1042711473 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
13 Hb_006332_010 0.1061916704 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
14 Hb_000103_140 0.1070433995 - - ribosomal protein S3a [Populus trichocarpa]
15 Hb_024714_100 0.1098368426 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
16 Hb_000103_180 0.1108984641 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
17 Hb_002811_360 0.1114236188 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
18 Hb_002774_060 0.1116082278 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
19 Hb_008511_050 0.111643592 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
20 Hb_000656_040 0.1119546325 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]

Gene co-expression network

sample Hb_000229_040 Hb_000229_040 Hb_021409_020 Hb_021409_020 Hb_000229_040--Hb_021409_020 Hb_003195_060 Hb_003195_060 Hb_000229_040--Hb_003195_060 Hb_168000_010 Hb_168000_010 Hb_000229_040--Hb_168000_010 Hb_004545_060 Hb_004545_060 Hb_000229_040--Hb_004545_060 Hb_000045_090 Hb_000045_090 Hb_000229_040--Hb_000045_090 Hb_022250_130 Hb_022250_130 Hb_000229_040--Hb_022250_130 Hb_002811_360 Hb_002811_360 Hb_021409_020--Hb_002811_360 Hb_003502_080 Hb_003502_080 Hb_021409_020--Hb_003502_080 Hb_021409_020--Hb_000045_090 Hb_002217_310 Hb_002217_310 Hb_021409_020--Hb_002217_310 Hb_021409_020--Hb_003195_060 Hb_008511_050 Hb_008511_050 Hb_003195_060--Hb_008511_050 Hb_002609_110 Hb_002609_110 Hb_003195_060--Hb_002609_110 Hb_003195_070 Hb_003195_070 Hb_003195_060--Hb_003195_070 Hb_003195_060--Hb_002811_360 Hb_006332_010 Hb_006332_010 Hb_003195_060--Hb_006332_010 Hb_005754_060 Hb_005754_060 Hb_003195_060--Hb_005754_060 Hb_000057_040 Hb_000057_040 Hb_168000_010--Hb_000057_040 Hb_000395_170 Hb_000395_170 Hb_168000_010--Hb_000395_170 Hb_003175_010 Hb_003175_010 Hb_168000_010--Hb_003175_010 Hb_007590_010 Hb_007590_010 Hb_168000_010--Hb_007590_010 Hb_168000_010--Hb_002609_110 Hb_007317_210 Hb_007317_210 Hb_168000_010--Hb_007317_210 Hb_010180_020 Hb_010180_020 Hb_004545_060--Hb_010180_020 Hb_004545_060--Hb_000045_090 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000329_030 Hb_000329_030 Hb_000045_090--Hb_000329_030 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_005686_060 Hb_005686_060 Hb_000045_090--Hb_005686_060 Hb_185830_020 Hb_185830_020 Hb_022250_130--Hb_185830_020 Hb_012305_050 Hb_012305_050 Hb_022250_130--Hb_012305_050 Hb_000103_180 Hb_000103_180 Hb_022250_130--Hb_000103_180 Hb_003847_080 Hb_003847_080 Hb_022250_130--Hb_003847_080 Hb_022250_130--Hb_006332_010 Hb_010691_060 Hb_010691_060 Hb_022250_130--Hb_010691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.9562 17.0296 25.7654 57.9593 67.2647 117.316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.2474 66.2336 81.928 35.6439 15.2788

CAGE analysis