Hb_000229_050

Information

Type -
Description -
Location Contig229: 39264-44987
Sequence    

Annotation

kegg
ID rcu:RCOM_1176070
description lrr receptor-linked protein kinase, putative (EC:2.7.10.1)
nr
ID XP_012088339.1
description PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
swissprot
ID Q6R2K3
description Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=2 SV=1
trembl
ID B9RW50
description Lrr receptor-linked protein kinase, putative OS=Ricinus communis GN=RCOM_1176070 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein strubbelig-receptor family 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23881: 40774-44177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000229_050 0.0 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
2 Hb_008206_080 0.0654336356 - - PREDICTED: probable cyclic nucleotide-gated ion channel 17 [Jatropha curcas]
3 Hb_000579_080 0.069910314 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
4 Hb_012633_050 0.0729239619 - - zinc finger protein, putative [Ricinus communis]
5 Hb_011716_010 0.0881635286 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
6 Hb_000739_240 0.0904317497 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]
7 Hb_000101_390 0.0906287501 - - PREDICTED: mucin-5B [Jatropha curcas]
8 Hb_006438_020 0.0984963776 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
9 Hb_016734_020 0.0985390344 - - sugar transporter, putative [Ricinus communis]
10 Hb_000926_060 0.1000666487 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003687_120 0.1016219585 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
12 Hb_008304_020 0.101907269 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
13 Hb_002687_180 0.1027174265 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
14 Hb_000120_890 0.1036031087 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
15 Hb_003636_080 0.1039605556 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
16 Hb_032823_020 0.1060871042 - - conserved hypothetical protein [Ricinus communis]
17 Hb_172979_010 0.1071252159 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
18 Hb_001504_010 0.1071444937 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
19 Hb_000913_030 0.107961495 - - nuclease, putative [Ricinus communis]
20 Hb_002913_010 0.10822287 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000229_050 Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000229_050--Hb_008206_080 Hb_000579_080 Hb_000579_080 Hb_000229_050--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_000229_050--Hb_012633_050 Hb_011716_010 Hb_011716_010 Hb_000229_050--Hb_011716_010 Hb_000739_240 Hb_000739_240 Hb_000229_050--Hb_000739_240 Hb_000101_390 Hb_000101_390 Hb_000229_050--Hb_000101_390 Hb_008206_080--Hb_000579_080 Hb_008206_080--Hb_012633_050 Hb_159809_070 Hb_159809_070 Hb_008206_080--Hb_159809_070 Hb_008304_020 Hb_008304_020 Hb_008206_080--Hb_008304_020 Hb_008206_080--Hb_000101_390 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_000579_080--Hb_012633_050 Hb_000579_080--Hb_008304_020 Hb_012633_050--Hb_001504_010 Hb_006438_020 Hb_006438_020 Hb_012633_050--Hb_006438_020 Hb_172979_010 Hb_172979_010 Hb_012633_050--Hb_172979_010 Hb_001279_190 Hb_001279_190 Hb_011716_010--Hb_001279_190 Hb_002687_180 Hb_002687_180 Hb_011716_010--Hb_002687_180 Hb_007483_070 Hb_007483_070 Hb_011716_010--Hb_007483_070 Hb_011716_010--Hb_001504_010 Hb_011716_010--Hb_006438_020 Hb_004228_120 Hb_004228_120 Hb_011716_010--Hb_004228_120 Hb_000739_240--Hb_000579_080 Hb_000739_240--Hb_008206_080 Hb_000739_240--Hb_159809_070 Hb_000739_240--Hb_004228_120 Hb_000724_020 Hb_000724_020 Hb_000739_240--Hb_000724_020 Hb_001504_060 Hb_001504_060 Hb_000101_390--Hb_001504_060 Hb_002445_030 Hb_002445_030 Hb_000101_390--Hb_002445_030 Hb_002006_150 Hb_002006_150 Hb_000101_390--Hb_002006_150 Hb_006824_010 Hb_006824_010 Hb_000101_390--Hb_006824_010 Hb_002684_020 Hb_002684_020 Hb_000101_390--Hb_002684_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.98814 9.34353 25.0453 12.4466 5.43386 5.48383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.29995 6.24681 6.75285 17.9119 10.9836

CAGE analysis