Hb_000230_070

Information

Type -
Description -
Location Contig230: 69664-71304
Sequence    

Annotation

kegg
ID rcu:RCOM_1428880
description Galactose oxidase precursor, putative (EC:1.1.3.9)
nr
ID XP_002512263.1
description Galactose oxidase precursor, putative [Ricinus communis]
swissprot
ID I1S2N3
description Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=GAOA PE=3 SV=1
trembl
ID B9REU4
description Galactose oxidase, putative OS=Ricinus communis GN=RCOM_1428880 PE=4 SV=1
Gene Ontology
ID GO:0045480
description galactose oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_070 0.0 - - Galactose oxidase precursor, putative [Ricinus communis]
2 Hb_143643_010 0.0766686222 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
3 Hb_001369_310 0.1844426475 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_004607_100 0.2061298915 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
5 Hb_001638_100 0.2786981287 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
6 Hb_040948_020 0.3078206912 - - -
7 Hb_000111_220 0.3085279615 - - unnamed protein product [Vitis vinifera]
8 Hb_004800_050 0.3195832431 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
9 Hb_027472_130 0.3289970696 - - Cytochrome P450 [Theobroma cacao]
10 Hb_008764_010 0.3312210367 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
11 Hb_001825_050 0.335967564 - - -
12 Hb_002345_080 0.3367611082 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_005211_110 0.3388059241 - - hypothetical protein POPTR_0010s13790g [Populus trichocarpa]
14 Hb_048308_010 0.3388818433 - - Peroxidase superfamily protein [Theobroma cacao]
15 Hb_001246_150 0.3407648091 - - hypothetical protein MIMGU_mgv1a021562mg [Erythranthe guttata]
16 Hb_001501_040 0.3408569496 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
17 Hb_002435_070 0.3455442582 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
18 Hb_004725_040 0.3489334398 - - -
19 Hb_000976_420 0.3537329829 - - conserved hypothetical protein [Ricinus communis]
20 Hb_142734_020 0.3546554406 - - PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_000230_070 Hb_000230_070 Hb_143643_010 Hb_143643_010 Hb_000230_070--Hb_143643_010 Hb_001369_310 Hb_001369_310 Hb_000230_070--Hb_001369_310 Hb_004607_100 Hb_004607_100 Hb_000230_070--Hb_004607_100 Hb_001638_100 Hb_001638_100 Hb_000230_070--Hb_001638_100 Hb_040948_020 Hb_040948_020 Hb_000230_070--Hb_040948_020 Hb_000111_220 Hb_000111_220 Hb_000230_070--Hb_000111_220 Hb_143643_010--Hb_001369_310 Hb_143643_010--Hb_004607_100 Hb_143643_010--Hb_000111_220 Hb_151497_010 Hb_151497_010 Hb_143643_010--Hb_151497_010 Hb_001907_130 Hb_001907_130 Hb_143643_010--Hb_001907_130 Hb_001369_310--Hb_004607_100 Hb_001369_310--Hb_040948_020 Hb_002345_080 Hb_002345_080 Hb_001369_310--Hb_002345_080 Hb_004800_110 Hb_004800_110 Hb_001369_310--Hb_004800_110 Hb_003228_070 Hb_003228_070 Hb_004607_100--Hb_003228_070 Hb_004607_100--Hb_002345_080 Hb_004607_100--Hb_000111_220 Hb_004800_050 Hb_004800_050 Hb_004607_100--Hb_004800_050 Hb_001638_100--Hb_040948_020 Hb_001638_100--Hb_004800_050 Hb_001501_040 Hb_001501_040 Hb_001638_100--Hb_001501_040 Hb_005348_130 Hb_005348_130 Hb_001638_100--Hb_005348_130 Hb_001638_100--Hb_002345_080 Hb_001638_100--Hb_004607_100 Hb_040948_020--Hb_002345_080 Hb_040948_020--Hb_004800_050 Hb_040948_020--Hb_001501_040 Hb_040948_020--Hb_004607_100 Hb_000836_590 Hb_000836_590 Hb_000111_220--Hb_000836_590 Hb_000893_050 Hb_000893_050 Hb_000111_220--Hb_000893_050 Hb_004785_120 Hb_004785_120 Hb_000111_220--Hb_004785_120 Hb_001021_110 Hb_001021_110 Hb_000111_220--Hb_001021_110 Hb_055147_010 Hb_055147_010 Hb_000111_220--Hb_055147_010 Hb_000438_040 Hb_000438_040 Hb_000111_220--Hb_000438_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0123077 0.0276113 0 0.0124019 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00883931 0

CAGE analysis