Hb_000230_080

Information

Type -
Description -
Location Contig230: 73846-86981
Sequence    

Annotation

kegg
ID rcu:RCOM_1428890
description map3k delta-1 protein kinase, putative (EC:2.7.11.25)
nr
ID XP_012089199.1
description PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID A0A067JI40
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23449 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase edr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23985: 74263-86768 , PASA_asmbl_23987: 81111-84057 , PASA_asmbl_23988: 73932-74663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_080 0.0 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
2 Hb_010710_010 0.055149239 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
3 Hb_000413_180 0.0689518537 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
4 Hb_000207_390 0.0777202454 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
5 Hb_002307_100 0.081846033 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
6 Hb_000390_070 0.0824813369 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
7 Hb_003750_080 0.0826285194 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
8 Hb_007757_110 0.0844405779 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
9 Hb_005730_030 0.08480017 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
10 Hb_000627_080 0.0851795403 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
11 Hb_000005_380 0.0879179019 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
12 Hb_004055_040 0.0899359465 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
13 Hb_002039_010 0.0903067971 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
14 Hb_019654_190 0.0906387895 - - protein kinase, putative [Ricinus communis]
15 Hb_033152_080 0.091743334 - - RNA-binding protein Nova-1, putative [Ricinus communis]
16 Hb_000953_010 0.0930284091 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
17 Hb_010175_020 0.0938979283 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000011_080 0.0939107952 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
19 Hb_000386_030 0.0942116553 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
20 Hb_000152_820 0.0943494883 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000230_080 Hb_000230_080 Hb_010710_010 Hb_010710_010 Hb_000230_080--Hb_010710_010 Hb_000413_180 Hb_000413_180 Hb_000230_080--Hb_000413_180 Hb_000207_390 Hb_000207_390 Hb_000230_080--Hb_000207_390 Hb_002307_100 Hb_002307_100 Hb_000230_080--Hb_002307_100 Hb_000390_070 Hb_000390_070 Hb_000230_080--Hb_000390_070 Hb_003750_080 Hb_003750_080 Hb_000230_080--Hb_003750_080 Hb_010710_010--Hb_000413_180 Hb_010710_010--Hb_003750_080 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_010175_020 Hb_010175_020 Hb_000413_180--Hb_010175_020 Hb_000413_180--Hb_003750_080 Hb_000413_180--Hb_000152_820 Hb_000386_030 Hb_000386_030 Hb_000413_180--Hb_000386_030 Hb_007163_090 Hb_007163_090 Hb_000207_390--Hb_007163_090 Hb_001797_050 Hb_001797_050 Hb_000207_390--Hb_001797_050 Hb_002200_130 Hb_002200_130 Hb_000207_390--Hb_002200_130 Hb_002154_030 Hb_002154_030 Hb_000207_390--Hb_002154_030 Hb_001301_200 Hb_001301_200 Hb_000207_390--Hb_001301_200 Hb_000803_190 Hb_000803_190 Hb_000207_390--Hb_000803_190 Hb_175338_030 Hb_175338_030 Hb_002307_100--Hb_175338_030 Hb_002477_160 Hb_002477_160 Hb_002307_100--Hb_002477_160 Hb_007757_110 Hb_007757_110 Hb_002307_100--Hb_007757_110 Hb_002307_100--Hb_010175_020 Hb_000661_050 Hb_000661_050 Hb_002307_100--Hb_000661_050 Hb_007558_140 Hb_007558_140 Hb_002307_100--Hb_007558_140 Hb_000627_080 Hb_000627_080 Hb_000390_070--Hb_000627_080 Hb_000390_070--Hb_007757_110 Hb_001930_010 Hb_001930_010 Hb_000390_070--Hb_001930_010 Hb_007586_030 Hb_007586_030 Hb_000390_070--Hb_007586_030 Hb_000244_250 Hb_000244_250 Hb_000390_070--Hb_000244_250 Hb_004055_040 Hb_004055_040 Hb_000390_070--Hb_004055_040 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.8591 38.2534 10.6326 15.6812 60.5846 77.652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5825 23.4015 73.6392 41.1961 14.542

CAGE analysis