Hb_000230_100

Information

Type -
Description -
Location Contig230: 115961-132784
Sequence    

Annotation

kegg
ID rcu:RCOM_1429060
description catalytic, putative
nr
ID XP_012089189.1
description PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVN2
description Acyltransferase-like protein At1g54570, chloroplastic OS=Arabidopsis thaliana GN=At1g54570 PE=2 SV=1
trembl
ID A0A067JUE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23443 PE=4 SV=1
Gene Ontology
ID GO:0016747
description acyltransferase-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23991: 130833-131071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_100 0.0 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_004195_240 0.1642545697 - - Peroxidase 72 precursor, putative [Ricinus communis]
3 Hb_000748_070 0.1664255656 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
4 Hb_000563_610 0.1688585281 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
5 Hb_000204_030 0.1730827254 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_097908_010 0.1766068677 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
7 Hb_002046_100 0.1774582723 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
8 Hb_000347_550 0.1799086907 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
9 Hb_148914_010 0.183794927 - - glutathione s-transferase, putative [Ricinus communis]
10 Hb_001268_330 0.1860709649 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_004712_080 0.1876627804 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
12 Hb_000245_140 0.1877006488 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
13 Hb_148435_010 0.1889900978 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_029510_110 0.1905227126 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
15 Hb_003428_100 0.1915800544 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_012796_050 0.1916182079 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
17 Hb_004774_060 0.1944970151 - - -
18 Hb_000025_510 0.1953200616 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
19 Hb_004055_180 0.1969529371 - - cell wall invertase [Manihot esculenta]
20 Hb_173448_010 0.1972272298 - - PREDICTED: galactose oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000230_100 Hb_000230_100 Hb_004195_240 Hb_004195_240 Hb_000230_100--Hb_004195_240 Hb_000748_070 Hb_000748_070 Hb_000230_100--Hb_000748_070 Hb_000563_610 Hb_000563_610 Hb_000230_100--Hb_000563_610 Hb_000204_030 Hb_000204_030 Hb_000230_100--Hb_000204_030 Hb_097908_010 Hb_097908_010 Hb_000230_100--Hb_097908_010 Hb_002046_100 Hb_002046_100 Hb_000230_100--Hb_002046_100 Hb_000347_550 Hb_000347_550 Hb_004195_240--Hb_000347_550 Hb_173448_010 Hb_173448_010 Hb_004195_240--Hb_173448_010 Hb_148435_010 Hb_148435_010 Hb_004195_240--Hb_148435_010 Hb_004774_060 Hb_004774_060 Hb_004195_240--Hb_004774_060 Hb_061195_010 Hb_061195_010 Hb_004195_240--Hb_061195_010 Hb_148914_010 Hb_148914_010 Hb_004195_240--Hb_148914_010 Hb_002057_010 Hb_002057_010 Hb_000748_070--Hb_002057_010 Hb_000748_070--Hb_004195_240 Hb_000748_070--Hb_148435_010 Hb_004055_180 Hb_004055_180 Hb_000748_070--Hb_004055_180 Hb_000748_070--Hb_000563_610 Hb_001936_030 Hb_001936_030 Hb_000748_070--Hb_001936_030 Hb_000563_610--Hb_004055_180 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_000245_140 Hb_000245_140 Hb_000563_610--Hb_000245_140 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_000563_610--Hb_004774_060 Hb_001104_200 Hb_001104_200 Hb_000204_030--Hb_001104_200 Hb_029510_110 Hb_029510_110 Hb_000204_030--Hb_029510_110 Hb_000204_030--Hb_002046_100 Hb_000204_030--Hb_000563_610 Hb_004445_090 Hb_004445_090 Hb_000204_030--Hb_004445_090 Hb_003428_100 Hb_003428_100 Hb_000204_030--Hb_003428_100 Hb_097908_010--Hb_004774_060 Hb_097908_010--Hb_004055_180 Hb_175968_010 Hb_175968_010 Hb_097908_010--Hb_175968_010 Hb_001464_010 Hb_001464_010 Hb_097908_010--Hb_001464_010 Hb_000659_010 Hb_000659_010 Hb_097908_010--Hb_000659_010 Hb_007417_020 Hb_007417_020 Hb_097908_010--Hb_007417_020 Hb_002046_100--Hb_000245_140 Hb_002046_100--Hb_000563_610 Hb_002046_100--Hb_004445_090 Hb_001168_010 Hb_001168_010 Hb_002046_100--Hb_001168_010 Hb_000648_120 Hb_000648_120 Hb_002046_100--Hb_000648_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.124193 0.22519 0.15308 0.127576 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.072309 0.0275484 2.32647 0.122858

CAGE analysis