Hb_000230_120

Information

Type -
Description -
Location Contig230: 142274-143914
Sequence    

Annotation

kegg
ID rcu:RCOM_1429100
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012089183.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
swissprot
ID Q9ZUE9
description Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
trembl
ID A0A067JUE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23438 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at2g06000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23994: 143707-144071
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
2 Hb_000181_070 0.0686421867 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000512_060 0.0731130498 - - PREDICTED: F-box/WD-40 repeat-containing protein At5g21040 [Jatropha curcas]
4 Hb_000125_170 0.0841580022 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
5 Hb_001488_070 0.0924517875 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000125_130 0.0956120235 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC104879785 [Vitis vinifera]
7 Hb_009178_030 0.1021969275 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000398_010 0.1034214601 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007532_030 0.1044874499 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
10 Hb_010128_080 0.1048763374 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
11 Hb_048219_010 0.1053788484 - - coronatine-insensitive 1 [Hevea brasiliensis]
12 Hb_031527_040 0.106980347 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
13 Hb_085863_030 0.1076764419 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31430 [Jatropha curcas]
14 Hb_007416_180 0.1078778771 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
15 Hb_000175_460 0.1089078656 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_000007_150 0.109126408 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
17 Hb_002813_040 0.1092968847 - - PREDICTED: PRA1 family protein G2 [Jatropha curcas]
18 Hb_000365_390 0.1099925604 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
19 Hb_000343_160 0.1103223564 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
20 Hb_000062_250 0.1106309013 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_120 Hb_000230_120 Hb_000181_070 Hb_000181_070 Hb_000230_120--Hb_000181_070 Hb_000512_060 Hb_000512_060 Hb_000230_120--Hb_000512_060 Hb_000125_170 Hb_000125_170 Hb_000230_120--Hb_000125_170 Hb_001488_070 Hb_001488_070 Hb_000230_120--Hb_001488_070 Hb_000125_130 Hb_000125_130 Hb_000230_120--Hb_000125_130 Hb_009178_030 Hb_009178_030 Hb_000230_120--Hb_009178_030 Hb_000181_070--Hb_000125_170 Hb_007416_180 Hb_007416_180 Hb_000181_070--Hb_007416_180 Hb_000181_070--Hb_000512_060 Hb_031527_040 Hb_031527_040 Hb_000181_070--Hb_031527_040 Hb_007532_030 Hb_007532_030 Hb_000181_070--Hb_007532_030 Hb_002105_040 Hb_002105_040 Hb_000512_060--Hb_002105_040 Hb_000512_060--Hb_009178_030 Hb_000175_460 Hb_000175_460 Hb_000512_060--Hb_000175_460 Hb_000035_320 Hb_000035_320 Hb_000512_060--Hb_000035_320 Hb_003052_140 Hb_003052_140 Hb_000125_170--Hb_003052_140 Hb_000125_170--Hb_031527_040 Hb_000373_150 Hb_000373_150 Hb_000125_170--Hb_000373_150 Hb_000125_170--Hb_007416_180 Hb_003464_050 Hb_003464_050 Hb_000125_170--Hb_003464_050 Hb_002813_040 Hb_002813_040 Hb_001488_070--Hb_002813_040 Hb_001488_070--Hb_000512_060 Hb_001488_070--Hb_000175_460 Hb_001488_070--Hb_031527_040 Hb_005686_060 Hb_005686_060 Hb_001488_070--Hb_005686_060 Hb_000510_320 Hb_000510_320 Hb_001488_070--Hb_000510_320 Hb_007904_200 Hb_007904_200 Hb_000125_130--Hb_007904_200 Hb_008643_040 Hb_008643_040 Hb_000125_130--Hb_008643_040 Hb_010712_030 Hb_010712_030 Hb_000125_130--Hb_010712_030 Hb_000365_390 Hb_000365_390 Hb_000125_130--Hb_000365_390 Hb_010457_030 Hb_010457_030 Hb_000125_130--Hb_010457_030 Hb_002835_080 Hb_002835_080 Hb_000125_130--Hb_002835_080 Hb_008725_260 Hb_008725_260 Hb_009178_030--Hb_008725_260 Hb_009178_030--Hb_007532_030 Hb_085863_030 Hb_085863_030 Hb_009178_030--Hb_085863_030 Hb_000866_220 Hb_000866_220 Hb_009178_030--Hb_000866_220 Hb_000003_250 Hb_000003_250 Hb_009178_030--Hb_000003_250 Hb_001014_030 Hb_001014_030 Hb_009178_030--Hb_001014_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.48153 4.10281 1.48772 3.5846 3.50238 4.93191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59251 4.07938 6.43565 1.59992 1.48951

CAGE analysis