Hb_000230_200

Information

Type -
Description -
Location Contig230: 227030-230369
Sequence    

Annotation

kegg
ID rcu:RCOM_0679060
description hypothetical protein
nr
ID XP_012069455.1
description PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
swissprot
ID Q93W28
description Uncharacterized protein At4g15545 OS=Arabidopsis thaliana GN=At4g15545 PE=1 SV=1
trembl
ID A0A067KV11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02054 PE=4 SV=1
Gene Ontology
ID GO:0016021
description ph-response transcription factor pacc rim101 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24011: 227031-230349 , PASA_asmbl_24012: 227031-230369
cDNA
(Sanger)
(ID:Location)		 026_E08.ab1: 228913-230369

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_200 0.0 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
2 Hb_002968_060 0.0475743706 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
3 Hb_001301_160 0.0674743981 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
4 Hb_003001_120 0.0685502415 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
5 Hb_001269_680 0.0688525156 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
6 Hb_007951_060 0.0740678019 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
7 Hb_029920_050 0.0755722976 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
8 Hb_000008_470 0.0757317633 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
9 Hb_001305_010 0.0781070876 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
10 Hb_096563_010 0.0783722687 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
11 Hb_002007_060 0.0788054398 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
12 Hb_005539_220 0.0795554814 - - spermidine synthase 1, putative [Ricinus communis]
13 Hb_004678_040 0.0807327976 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
14 Hb_001635_170 0.0827080385 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
15 Hb_000103_560 0.0836288047 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_003929_160 0.0837651109 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
17 Hb_000089_220 0.0841169874 - - PREDICTED: protein FAM133-like [Populus euphratica]
18 Hb_007075_040 0.0867011398 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
19 Hb_000210_180 0.0869360301 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_002188_130 0.0876365695 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_200 Hb_000230_200 Hb_002968_060 Hb_002968_060 Hb_000230_200--Hb_002968_060 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_003001_120 Hb_003001_120 Hb_000230_200--Hb_003001_120 Hb_001269_680 Hb_001269_680 Hb_000230_200--Hb_001269_680 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050 Hb_002007_060 Hb_002007_060 Hb_002968_060--Hb_002007_060 Hb_002968_060--Hb_003001_120 Hb_002968_060--Hb_001269_680 Hb_010661_030 Hb_010661_030 Hb_002968_060--Hb_010661_030 Hb_000103_560 Hb_000103_560 Hb_002968_060--Hb_000103_560 Hb_096563_010 Hb_096563_010 Hb_001301_160--Hb_096563_010 Hb_001301_160--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_001301_160--Hb_011571_020 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_005539_350 Hb_005539_350 Hb_001269_680--Hb_005539_350 Hb_001269_680--Hb_002007_060 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_001305_010 Hb_001305_010 Hb_007951_060--Hb_001305_010 Hb_000327_120 Hb_000327_120 Hb_007951_060--Hb_000327_120 Hb_000926_280 Hb_000926_280 Hb_007951_060--Hb_000926_280 Hb_001439_150 Hb_001439_150 Hb_007951_060--Hb_001439_150 Hb_003417_020 Hb_003417_020 Hb_007951_060--Hb_003417_020 Hb_007576_040 Hb_007576_040 Hb_007951_060--Hb_007576_040 Hb_001635_170 Hb_001635_170 Hb_029920_050--Hb_001635_170 Hb_033153_050 Hb_033153_050 Hb_029920_050--Hb_033153_050 Hb_008803_090 Hb_008803_090 Hb_029920_050--Hb_008803_090 Hb_007336_020 Hb_007336_020 Hb_029920_050--Hb_007336_020 Hb_033843_010 Hb_033843_010 Hb_029920_050--Hb_033843_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.913 7.63161 9.01548 9.51683 11.8967 17.4786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9032 17.8713 14.548 5.41313 5.7153

CAGE analysis