Hb_000230_220

Information

Type -
Description -
Location Contig230: 243302-243862
Sequence    

Annotation

kegg
ID rcu:RCOM_0679040
description hypothetical protein
nr
ID XP_002516830.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RSW1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679040 PE=4 SV=1
Gene Ontology
ID GO:0005783
description duf679 domain membrane protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 036_G10.ab1: 243220-244048

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003197_050 0.0709577417 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
3 Hb_000152_630 0.0737213701 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Jatropha curcas]
4 Hb_116349_080 0.0749375148 - - Nectarin-1 precursor, putative [Ricinus communis]
5 Hb_000188_140 0.0758962796 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
6 Hb_000155_030 0.0834929024 - - PREDICTED: uncharacterized protein LOC105649591 [Jatropha curcas]
7 Hb_025557_090 0.0848459213 - - hypothetical protein glysoja_034865 [Glycine soja]
8 Hb_069384_010 0.0857352823 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
9 Hb_000087_160 0.0894375304 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_187906_010 0.0921631221 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
11 Hb_000497_080 0.093805183 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006351_050 0.0977552564 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
13 Hb_004102_180 0.1000542911 - - zinc finger family protein [Populus trichocarpa]
14 Hb_011218_010 0.100933803 - - PREDICTED: putative indole-3-acetic acid-amido synthetase GH3.9 [Jatropha curcas]
15 Hb_007290_010 0.1026322651 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000959_170 0.1044742869 - - Cell division protein kinase 7, putative [Ricinus communis]
17 Hb_000186_090 0.1073901866 - - ACC oxidase 1 [Hevea brasiliensis]
18 Hb_000964_120 0.1089827026 - - DNA-damage-inducible protein f, putative [Ricinus communis]
19 Hb_003561_020 0.11012929 - - gulonolactone oxidase, putative [Ricinus communis]
20 Hb_003598_050 0.1115769854 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000230_220 Hb_000230_220 Hb_003197_050 Hb_003197_050 Hb_000230_220--Hb_003197_050 Hb_000152_630 Hb_000152_630 Hb_000230_220--Hb_000152_630 Hb_116349_080 Hb_116349_080 Hb_000230_220--Hb_116349_080 Hb_000188_140 Hb_000188_140 Hb_000230_220--Hb_000188_140 Hb_000155_030 Hb_000155_030 Hb_000230_220--Hb_000155_030 Hb_025557_090 Hb_025557_090 Hb_000230_220--Hb_025557_090 Hb_003197_050--Hb_116349_080 Hb_003197_050--Hb_000155_030 Hb_000964_120 Hb_000964_120 Hb_003197_050--Hb_000964_120 Hb_000497_080 Hb_000497_080 Hb_003197_050--Hb_000497_080 Hb_000934_120 Hb_000934_120 Hb_003197_050--Hb_000934_120 Hb_000152_630--Hb_000188_140 Hb_069384_010 Hb_069384_010 Hb_000152_630--Hb_069384_010 Hb_004102_180 Hb_004102_180 Hb_000152_630--Hb_004102_180 Hb_000087_160 Hb_000087_160 Hb_000152_630--Hb_000087_160 Hb_000152_630--Hb_116349_080 Hb_116349_080--Hb_000155_030 Hb_116349_080--Hb_025557_090 Hb_009158_010 Hb_009158_010 Hb_116349_080--Hb_009158_010 Hb_003598_050 Hb_003598_050 Hb_116349_080--Hb_003598_050 Hb_000188_140--Hb_069384_010 Hb_000186_090 Hb_000186_090 Hb_000188_140--Hb_000186_090 Hb_000188_140--Hb_000087_160 Hb_084304_010 Hb_084304_010 Hb_000188_140--Hb_084304_010 Hb_000155_030--Hb_025557_090 Hb_000155_030--Hb_009158_010 Hb_000155_030--Hb_000964_120 Hb_025557_090--Hb_009158_010 Hb_022250_140 Hb_022250_140 Hb_025557_090--Hb_022250_140 Hb_025557_090--Hb_000964_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0480099 4.97974 7.30332 56.9645 0 0.153343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111782 0 0 0.0361785 3.52912

CAGE analysis