Hb_000230_240

Information

Type -
Description -
Location Contig230: 248021-250069
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20270g
description POPTRDRAFT_820907; tRNA/rRNA methyltransferase family protein
nr
ID XP_002312722.1
description tRNA/rRNA methyltransferase family protein [Populus trichocarpa]
swissprot
ID P94538
description Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 168) GN=ysgA PE=3 SV=2
trembl
ID A9PAZ0
description tRNA/rRNA methyltransferase family protein OS=Populus trichocarpa GN=POPTR_0008s20270g PE=2 SV=1
Gene Ontology
ID GO:0003723
description rrna methyltransferase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24015: 248192-250220
cDNA
(Sanger)
(ID:Location)		 003_M15.ab1: 248192-250220

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_240 0.0 - - tRNA/rRNA methyltransferase family protein [Populus trichocarpa]
2 Hb_000080_210 0.1384085499 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
3 Hb_002609_160 0.144884859 - - PREDICTED: GDP-mannose transporter GONST2 [Jatropha curcas]
4 Hb_009182_010 0.1455079851 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
5 Hb_004044_040 0.1486075283 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
6 Hb_000896_040 0.1507025716 - - BnaC02g13240D [Brassica napus]
7 Hb_076233_040 0.1566489044 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
8 Hb_002236_040 0.158317691 - - PREDICTED: cytochrome c [Jatropha curcas]
9 Hb_003126_070 0.1585227477 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
10 Hb_005551_040 0.1592518921 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
11 Hb_009113_050 0.1605569509 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
12 Hb_006277_110 0.1609612997 - - protein with unknown function [Ricinus communis]
13 Hb_000336_240 0.1619828845 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
14 Hb_034380_020 0.1623786611 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
15 Hb_002014_020 0.1643727005 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
16 Hb_000363_360 0.1661787699 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
17 Hb_005306_180 0.1663695927 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [Jatropha curcas]
18 Hb_004889_010 0.1667011761 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
19 Hb_004672_010 0.1667207965 - - ecotropic viral integration site, putative [Ricinus communis]
20 Hb_006907_130 0.1670324225 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000230_240 Hb_000230_240 Hb_000080_210 Hb_000080_210 Hb_000230_240--Hb_000080_210 Hb_002609_160 Hb_002609_160 Hb_000230_240--Hb_002609_160 Hb_009182_010 Hb_009182_010 Hb_000230_240--Hb_009182_010 Hb_004044_040 Hb_004044_040 Hb_000230_240--Hb_004044_040 Hb_000896_040 Hb_000896_040 Hb_000230_240--Hb_000896_040 Hb_076233_040 Hb_076233_040 Hb_000230_240--Hb_076233_040 Hb_005092_060 Hb_005092_060 Hb_000080_210--Hb_005092_060 Hb_009113_050 Hb_009113_050 Hb_000080_210--Hb_009113_050 Hb_006907_130 Hb_006907_130 Hb_000080_210--Hb_006907_130 Hb_012794_010 Hb_012794_010 Hb_000080_210--Hb_012794_010 Hb_006277_110 Hb_006277_110 Hb_000080_210--Hb_006277_110 Hb_002662_030 Hb_002662_030 Hb_000080_210--Hb_002662_030 Hb_000923_090 Hb_000923_090 Hb_002609_160--Hb_000923_090 Hb_000030_200 Hb_000030_200 Hb_002609_160--Hb_000030_200 Hb_006915_040 Hb_006915_040 Hb_002609_160--Hb_006915_040 Hb_150930_010 Hb_150930_010 Hb_002609_160--Hb_150930_010 Hb_005307_050 Hb_005307_050 Hb_002609_160--Hb_005307_050 Hb_000087_130 Hb_000087_130 Hb_002609_160--Hb_000087_130 Hb_007441_040 Hb_007441_040 Hb_009182_010--Hb_007441_040 Hb_000102_020 Hb_000102_020 Hb_009182_010--Hb_000102_020 Hb_143766_010 Hb_143766_010 Hb_009182_010--Hb_143766_010 Hb_000982_090 Hb_000982_090 Hb_009182_010--Hb_000982_090 Hb_091433_020 Hb_091433_020 Hb_009182_010--Hb_091433_020 Hb_004157_030 Hb_004157_030 Hb_009182_010--Hb_004157_030 Hb_008103_050 Hb_008103_050 Hb_004044_040--Hb_008103_050 Hb_007894_170 Hb_007894_170 Hb_004044_040--Hb_007894_170 Hb_000174_210 Hb_000174_210 Hb_004044_040--Hb_000174_210 Hb_004044_040--Hb_076233_040 Hb_000331_180 Hb_000331_180 Hb_004044_040--Hb_000331_180 Hb_006816_260 Hb_006816_260 Hb_004044_040--Hb_006816_260 Hb_003098_020 Hb_003098_020 Hb_000896_040--Hb_003098_020 Hb_000922_040 Hb_000922_040 Hb_000896_040--Hb_000922_040 Hb_180074_010 Hb_180074_010 Hb_000896_040--Hb_180074_010 Hb_000417_260 Hb_000417_260 Hb_000896_040--Hb_000417_260 Hb_000896_040--Hb_091433_020 Hb_004672_010 Hb_004672_010 Hb_000896_040--Hb_004672_010 Hb_008841_020 Hb_008841_020 Hb_076233_040--Hb_008841_020 Hb_003126_070 Hb_003126_070 Hb_076233_040--Hb_003126_070 Hb_000329_210 Hb_000329_210 Hb_076233_040--Hb_000329_210 Hb_010883_050 Hb_010883_050 Hb_076233_040--Hb_010883_050 Hb_006420_080 Hb_006420_080 Hb_076233_040--Hb_006420_080 Hb_005054_210 Hb_005054_210 Hb_076233_040--Hb_005054_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.667196 0.0965729 0.570309 0.896094 0.0315865 0.777232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.16493 1.22113 0.874431 1.01725 0.484749

CAGE analysis