Hb_000230_260

Information

Type -
Description -
Location Contig230: 260341-264951
Sequence    

Annotation

kegg
ID rcu:RCOM_0678880
description hypothetical protein
nr
ID XP_012069461.1
description PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
swissprot
ID Q0WPJ7
description Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana GN=RF298 PE=2 SV=1
trembl
ID A0A067KV80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02060 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rf298

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_260 0.0 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
2 Hb_071130_010 0.0467170449 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
3 Hb_000069_120 0.0526535266 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]
4 Hb_041327_010 0.0590361267 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
5 Hb_003060_060 0.0613966087 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
6 Hb_085781_020 0.0621025923 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
7 Hb_000412_010 0.0656400272 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000723_220 0.067156528 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
9 Hb_017358_040 0.0674315034 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
10 Hb_009296_040 0.0676491537 - - hypothetical protein L484_007435 [Morus notabilis]
11 Hb_004019_120 0.0686334952 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
12 Hb_000537_050 0.0706970665 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
13 Hb_002639_080 0.0734845156 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
14 Hb_011016_050 0.0754286747 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
15 Hb_000215_140 0.0754466961 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
16 Hb_000592_030 0.0771587 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
17 Hb_000395_070 0.0773474377 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
18 Hb_000667_030 0.0776032172 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
19 Hb_000261_480 0.0777388062 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
20 Hb_000872_010 0.0778390644 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_260 Hb_000230_260 Hb_071130_010 Hb_071130_010 Hb_000230_260--Hb_071130_010 Hb_000069_120 Hb_000069_120 Hb_000230_260--Hb_000069_120 Hb_041327_010 Hb_041327_010 Hb_000230_260--Hb_041327_010 Hb_003060_060 Hb_003060_060 Hb_000230_260--Hb_003060_060 Hb_085781_020 Hb_085781_020 Hb_000230_260--Hb_085781_020 Hb_000412_010 Hb_000412_010 Hb_000230_260--Hb_000412_010 Hb_071130_010--Hb_085781_020 Hb_071130_010--Hb_000069_120 Hb_002639_080 Hb_002639_080 Hb_071130_010--Hb_002639_080 Hb_001188_020 Hb_001188_020 Hb_071130_010--Hb_001188_020 Hb_071130_010--Hb_041327_010 Hb_000069_120--Hb_041327_010 Hb_017358_040 Hb_017358_040 Hb_000069_120--Hb_017358_040 Hb_000069_120--Hb_002639_080 Hb_000537_050 Hb_000537_050 Hb_000069_120--Hb_000537_050 Hb_041327_010--Hb_002639_080 Hb_012286_040 Hb_012286_040 Hb_041327_010--Hb_012286_040 Hb_000261_480 Hb_000261_480 Hb_041327_010--Hb_000261_480 Hb_041327_010--Hb_000537_050 Hb_003060_060--Hb_000412_010 Hb_000395_070 Hb_000395_070 Hb_003060_060--Hb_000395_070 Hb_001529_040 Hb_001529_040 Hb_003060_060--Hb_001529_040 Hb_003060_060--Hb_085781_020 Hb_003060_060--Hb_041327_010 Hb_000140_210 Hb_000140_210 Hb_085781_020--Hb_000140_210 Hb_000066_170 Hb_000066_170 Hb_085781_020--Hb_000066_170 Hb_085781_020--Hb_002639_080 Hb_000412_010--Hb_000395_070 Hb_159558_010 Hb_159558_010 Hb_000412_010--Hb_159558_010 Hb_001550_060 Hb_001550_060 Hb_000412_010--Hb_001550_060 Hb_001628_070 Hb_001628_070 Hb_000412_010--Hb_001628_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.61421 7.40676 3.25026 7.71135 7.23731 6.92215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.67118 3.81168 6.28656 10.0883 6.6604

CAGE analysis