Hb_000230_270

Information

Type -
Description -
Location Contig230: 269915-272519
Sequence    

Annotation

kegg
ID pmum:103322880
description peptide methionine sulfoxide reductase B5-like
nr
ID XP_012069464.1
description PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
swissprot
ID Q10L32
description Peptide methionine sulfoxide reductase B5 OS=Oryza sativa subsp. japonica GN=MSRB5 PE=2 SV=1
trembl
ID A0A067L7J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02062 PE=4 SV=1
Gene Ontology
ID GO:0033743
description peptide methionine sulfoxide reductase b5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24022: 269628-272488 , PASA_asmbl_24023: 271947-272316
cDNA
(Sanger)
(ID:Location)		 007_L01.ab1: 269902-272488 , 033_I03.ab1: 269902-272486

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_270 0.0 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
2 Hb_001439_100 0.0942023726 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
3 Hb_000329_630 0.1026302368 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
4 Hb_000347_030 0.1060447818 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
5 Hb_000125_190 0.118539774 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
6 Hb_029584_050 0.1192338088 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
7 Hb_000446_030 0.1226969579 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_005054_290 0.1260776694 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
9 Hb_000329_650 0.1273701237 - - hypothetical protein POPTR_0014s056001g, partial [Populus trichocarpa]
10 Hb_093084_050 0.1317652131 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
11 Hb_004883_030 0.1334900175 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2-like [Jatropha curcas]
12 Hb_020400_050 0.136140715 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
13 Hb_000015_040 0.1379533765 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
14 Hb_000000_460 0.1379958825 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
15 Hb_000656_110 0.1380578013 - - nucleolysin tia-1, putative [Ricinus communis]
16 Hb_000069_600 0.1418629154 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
17 Hb_001653_020 0.1421406792 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
18 Hb_089995_010 0.1426101809 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
19 Hb_007002_030 0.1429303455 - - PREDICTED: transmembrane protein 205 [Jatropha curcas]
20 Hb_001102_140 0.1431837141 - - PREDICTED: methyl-CpG-binding domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000230_270 Hb_000230_270 Hb_001439_100 Hb_001439_100 Hb_000230_270--Hb_001439_100 Hb_000329_630 Hb_000329_630 Hb_000230_270--Hb_000329_630 Hb_000347_030 Hb_000347_030 Hb_000230_270--Hb_000347_030 Hb_000125_190 Hb_000125_190 Hb_000230_270--Hb_000125_190 Hb_029584_050 Hb_029584_050 Hb_000230_270--Hb_029584_050 Hb_000446_030 Hb_000446_030 Hb_000230_270--Hb_000446_030 Hb_005054_290 Hb_005054_290 Hb_001439_100--Hb_005054_290 Hb_001439_100--Hb_000329_630 Hb_001439_100--Hb_029584_050 Hb_000015_040 Hb_000015_040 Hb_001439_100--Hb_000015_040 Hb_000000_460 Hb_000000_460 Hb_001439_100--Hb_000000_460 Hb_000329_630--Hb_005054_290 Hb_000571_120 Hb_000571_120 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650 Hb_000329_630--Hb_000000_460 Hb_000347_030--Hb_000329_630 Hb_000347_030--Hb_001439_100 Hb_000958_110 Hb_000958_110 Hb_000347_030--Hb_000958_110 Hb_000347_030--Hb_000015_040 Hb_004837_130 Hb_004837_130 Hb_000347_030--Hb_004837_130 Hb_000347_030--Hb_029584_050 Hb_001519_050 Hb_001519_050 Hb_000125_190--Hb_001519_050 Hb_020400_050 Hb_020400_050 Hb_000125_190--Hb_020400_050 Hb_000635_150 Hb_000635_150 Hb_000125_190--Hb_000635_150 Hb_002061_040 Hb_002061_040 Hb_000125_190--Hb_002061_040 Hb_000123_170 Hb_000123_170 Hb_000125_190--Hb_000123_170 Hb_001833_110 Hb_001833_110 Hb_000125_190--Hb_001833_110 Hb_029584_050--Hb_000015_040 Hb_006615_020 Hb_006615_020 Hb_029584_050--Hb_006615_020 Hb_001653_020 Hb_001653_020 Hb_029584_050--Hb_001653_020 Hb_001268_410 Hb_001268_410 Hb_029584_050--Hb_001268_410 Hb_000665_050 Hb_000665_050 Hb_029584_050--Hb_000665_050 Hb_000025_120 Hb_000025_120 Hb_000446_030--Hb_000025_120 Hb_000987_120 Hb_000987_120 Hb_000446_030--Hb_000987_120 Hb_001722_100 Hb_001722_100 Hb_000446_030--Hb_001722_100 Hb_000696_340 Hb_000696_340 Hb_000446_030--Hb_000696_340 Hb_174865_030 Hb_174865_030 Hb_000446_030--Hb_174865_030 Hb_000221_150 Hb_000221_150 Hb_000446_030--Hb_000221_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.49 153.2 63.3645 163.852 74.8937 202.032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
514.293 166.879 196.413 208.23 85.9065

CAGE analysis