Hb_000230_290

Information

Type -
Description -
Location Contig230: 284370-286733
Sequence    

Annotation

kegg
ID rcu:RCOM_0678830
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002516819.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q7XJ53
description Probable protein phosphatase 2C 35 OS=Arabidopsis thaliana GN=At3g06270 PE=2 SV=1
trembl
ID B9RSV0
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0678830 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_290 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_009486_040 0.10900552 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_000331_490 0.1179970413 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
4 Hb_001916_090 0.1226051778 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
5 Hb_021495_020 0.1301326619 - - chitinase, putative [Ricinus communis]
6 Hb_001089_060 0.1344457226 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
7 Hb_007820_010 0.1348958582 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
8 Hb_011224_100 0.1401678482 - - conserved hypothetical protein [Ricinus communis]
9 Hb_034585_010 0.1405471805 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
10 Hb_004680_120 0.1435111031 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
11 Hb_000941_150 0.1479861553 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
12 Hb_002289_060 0.1496606707 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000556_090 0.1500406514 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
14 Hb_043792_040 0.1506760716 - - hypothetical protein, partial [Rosa rugosa]
15 Hb_000613_010 0.1540181654 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
16 Hb_000465_280 0.1541796851 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
17 Hb_001498_010 0.1569880241 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
18 Hb_001640_030 0.1570877653 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
19 Hb_091296_010 0.1571144302 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_002055_040 0.1571911817 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000230_290 Hb_000230_290 Hb_009486_040 Hb_009486_040 Hb_000230_290--Hb_009486_040 Hb_000331_490 Hb_000331_490 Hb_000230_290--Hb_000331_490 Hb_001916_090 Hb_001916_090 Hb_000230_290--Hb_001916_090 Hb_021495_020 Hb_021495_020 Hb_000230_290--Hb_021495_020 Hb_001089_060 Hb_001089_060 Hb_000230_290--Hb_001089_060 Hb_007820_010 Hb_007820_010 Hb_000230_290--Hb_007820_010 Hb_003952_060 Hb_003952_060 Hb_009486_040--Hb_003952_060 Hb_003025_140 Hb_003025_140 Hb_009486_040--Hb_003025_140 Hb_000078_080 Hb_000078_080 Hb_009486_040--Hb_000078_080 Hb_003607_070 Hb_003607_070 Hb_009486_040--Hb_003607_070 Hb_002055_040 Hb_002055_040 Hb_009486_040--Hb_002055_040 Hb_002232_390 Hb_002232_390 Hb_000331_490--Hb_002232_390 Hb_003475_020 Hb_003475_020 Hb_000331_490--Hb_003475_020 Hb_009020_040 Hb_009020_040 Hb_000331_490--Hb_009020_040 Hb_000368_090 Hb_000368_090 Hb_000331_490--Hb_000368_090 Hb_000878_030 Hb_000878_030 Hb_000331_490--Hb_000878_030 Hb_002289_060 Hb_002289_060 Hb_001916_090--Hb_002289_060 Hb_000409_030 Hb_000409_030 Hb_001916_090--Hb_000409_030 Hb_000359_210 Hb_000359_210 Hb_001916_090--Hb_000359_210 Hb_000941_150 Hb_000941_150 Hb_001916_090--Hb_000941_150 Hb_007416_210 Hb_007416_210 Hb_001916_090--Hb_007416_210 Hb_003206_110 Hb_003206_110 Hb_001916_090--Hb_003206_110 Hb_000062_400 Hb_000062_400 Hb_021495_020--Hb_000062_400 Hb_001491_030 Hb_001491_030 Hb_021495_020--Hb_001491_030 Hb_021495_020--Hb_009020_040 Hb_011926_040 Hb_011926_040 Hb_021495_020--Hb_011926_040 Hb_003746_010 Hb_003746_010 Hb_021495_020--Hb_003746_010 Hb_011224_100 Hb_011224_100 Hb_021495_020--Hb_011224_100 Hb_000816_100 Hb_000816_100 Hb_001089_060--Hb_000816_100 Hb_000016_130 Hb_000016_130 Hb_001089_060--Hb_000016_130 Hb_000300_120 Hb_000300_120 Hb_001089_060--Hb_000300_120 Hb_000033_110 Hb_000033_110 Hb_001089_060--Hb_000033_110 Hb_001498_010 Hb_001498_010 Hb_001089_060--Hb_001498_010 Hb_001259_020 Hb_001259_020 Hb_001089_060--Hb_001259_020 Hb_002099_080 Hb_002099_080 Hb_007820_010--Hb_002099_080 Hb_007820_010--Hb_002055_040 Hb_003032_020 Hb_003032_020 Hb_007820_010--Hb_003032_020 Hb_000366_040 Hb_000366_040 Hb_007820_010--Hb_000366_040 Hb_000204_120 Hb_000204_120 Hb_007820_010--Hb_000204_120 Hb_000352_190 Hb_000352_190 Hb_007820_010--Hb_000352_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43213 1.20761 1.3336 2.80499 1.46472 2.34528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.68326 0.985389 3.2864 0.88428 5.08267

CAGE analysis