Hb_000230_330

Information

Type -
Description -
Location Contig230: 323384-329298
Sequence    

Annotation

kegg
ID rcu:RCOM_0678580
description structural constituent of ribosome, putative
nr
ID XP_011006602.1
description PREDICTED: calcium-binding protein 39-like [Populus euphratica]
swissprot
ID Q9H9S4
description Calcium-binding protein 39-like OS=Homo sapiens GN=CAB39L PE=1 SV=3
trembl
ID B9RSU5
description Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_0678580 PE=4 SV=1
Gene Ontology
ID GO:0005488
description calcium-binding protein 39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24028: 323469-324786 , PASA_asmbl_24031: 325876-328560 , PASA_asmbl_24032: 325935-327948 , PASA_asmbl_24033: 327200-327686 , PASA_asmbl_24034: 328584-329232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_330 0.0 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
2 Hb_001584_110 0.0527356579 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
3 Hb_000390_060 0.0552484278 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
4 Hb_001504_160 0.056476673 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
5 Hb_000462_150 0.0638583548 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
6 Hb_003434_060 0.0696615545 - - PREDICTED: membrane-bound transcription factor site-2 protease homolog isoform X1 [Jatropha curcas]
7 Hb_000076_080 0.0699348991 - - PREDICTED: protein MOS2 [Jatropha curcas]
8 Hb_003384_030 0.0726406172 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
9 Hb_002928_060 0.074860893 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
10 Hb_000048_140 0.0757504332 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
11 Hb_002874_070 0.0764946669 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
12 Hb_000077_050 0.0775861069 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_010222_030 0.0780058665 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
14 Hb_022256_040 0.0792415741 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
15 Hb_000034_050 0.0797775288 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
16 Hb_012654_010 0.0805554393 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
17 Hb_002200_130 0.0808401055 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
18 Hb_011282_030 0.0809139399 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
19 Hb_000078_130 0.0818883431 - - -
20 Hb_001019_170 0.0843948734 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_330 Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_002874_070 Hb_002874_070 Hb_001584_110--Hb_002874_070 Hb_014568_030 Hb_014568_030 Hb_001584_110--Hb_014568_030 Hb_011282_030 Hb_011282_030 Hb_001584_110--Hb_011282_030 Hb_001584_110--Hb_000390_060 Hb_001584_110--Hb_000462_150 Hb_000390_060--Hb_003434_060 Hb_000120_500 Hb_000120_500 Hb_000390_060--Hb_000120_500 Hb_000034_050 Hb_000034_050 Hb_000390_060--Hb_000034_050 Hb_000316_030 Hb_000316_030 Hb_000390_060--Hb_000316_030 Hb_001504_160--Hb_000076_080 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_000462_150--Hb_002818_040 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_000956_030 Hb_000956_030 Hb_003434_060--Hb_000956_030 Hb_003434_060--Hb_000120_500 Hb_004198_010 Hb_004198_010 Hb_003434_060--Hb_004198_010 Hb_005883_050 Hb_005883_050 Hb_003434_060--Hb_005883_050 Hb_003434_060--Hb_000316_030 Hb_000076_080--Hb_004724_360 Hb_000684_420 Hb_000684_420 Hb_000076_080--Hb_000684_420 Hb_002097_090 Hb_002097_090 Hb_000076_080--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000076_080--Hb_002400_180 Hb_000186_280 Hb_000186_280 Hb_000076_080--Hb_000186_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.2396 16.0391 9.73339 15.0902 54.2912 64.0428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2445 19.6337 32.2545 16.6811 7.51483

CAGE analysis