Hb_000230_360

Information

Type -
Description -
Location Contig230: 339390-341014
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20370g
description POPTRDRAFT_814068; hypothetical protein
nr
ID XP_012069478.1
description PREDICTED: BI1-like protein [Jatropha curcas]
swissprot
ID Q94A20
description BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1
trembl
ID A0A067KYK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02071 PE=4 SV=1
Gene Ontology
ID GO:0005622
description bi1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24035: 339463-341040
cDNA
(Sanger)
(ID:Location)		 009_G22.ab1: 339983-341038 , 011_K22.ab1: 339621-340972 , 026_O19.ab1: 339778-341040

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_360 0.0 - - PREDICTED: BI1-like protein [Jatropha curcas]
2 Hb_000061_310 0.0725496675 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
3 Hb_002301_370 0.0760076296 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
4 Hb_031385_010 0.0779256245 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
5 Hb_001440_010 0.0818222051 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
6 Hb_000834_220 0.0981579387 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
7 Hb_001019_160 0.1010184701 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003607_140 0.1042070316 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
9 Hb_003687_040 0.1047659027 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]
10 Hb_001048_100 0.1061000722 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
11 Hb_002316_020 0.1080390496 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]
12 Hb_002685_160 0.1097574721 - - leucine-rich repeat protein, putative [Ricinus communis]
13 Hb_003656_090 0.1099734463 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
14 Hb_001946_200 0.1136305544 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
15 Hb_010174_180 0.1140105845 - - protein binding protein, putative [Ricinus communis]
16 Hb_005724_040 0.1151500023 - - hypothetical protein JCGZ_13142 [Jatropha curcas]
17 Hb_000731_210 0.1154511687 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022092_110 0.1162986488 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
19 Hb_000318_170 0.121072923 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
20 Hb_003106_110 0.1228846384 - - betaine aldehyde dehydrogenase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000230_360 Hb_000230_360 Hb_000061_310 Hb_000061_310 Hb_000230_360--Hb_000061_310 Hb_002301_370 Hb_002301_370 Hb_000230_360--Hb_002301_370 Hb_031385_010 Hb_031385_010 Hb_000230_360--Hb_031385_010 Hb_001440_010 Hb_001440_010 Hb_000230_360--Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_000230_360--Hb_000834_220 Hb_001019_160 Hb_001019_160 Hb_000230_360--Hb_001019_160 Hb_003687_040 Hb_003687_040 Hb_000061_310--Hb_003687_040 Hb_000061_310--Hb_031385_010 Hb_000061_310--Hb_001019_160 Hb_001048_100 Hb_001048_100 Hb_000061_310--Hb_001048_100 Hb_000061_310--Hb_002301_370 Hb_000731_210 Hb_000731_210 Hb_002301_370--Hb_000731_210 Hb_002301_370--Hb_001440_010 Hb_002301_370--Hb_031385_010 Hb_002301_370--Hb_001048_100 Hb_000398_140 Hb_000398_140 Hb_002301_370--Hb_000398_140 Hb_031385_010--Hb_001048_100 Hb_002316_020 Hb_002316_020 Hb_031385_010--Hb_002316_020 Hb_010174_180 Hb_010174_180 Hb_031385_010--Hb_010174_180 Hb_031385_010--Hb_003687_040 Hb_001440_010--Hb_000834_220 Hb_001946_200 Hb_001946_200 Hb_001440_010--Hb_001946_200 Hb_003656_090 Hb_003656_090 Hb_001440_010--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_001440_010--Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001440_010--Hb_022092_110 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_000834_220--Hb_003656_090 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_001019_160--Hb_003687_040 Hb_001019_160--Hb_000834_220 Hb_001019_160--Hb_031385_010 Hb_001019_160--Hb_001440_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.73699 98.4173 184.623 190.262 8.77045 6.26673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.36861 2.64545 3.30333 110.935 131.678

CAGE analysis