Hb_000230_390

Information

Type -
Description -
Location Contig230: 359965-361320
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20430g
description POPTRDRAFT_565298; F-box family protein
nr
ID XP_012069485.1
description PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
swissprot
ID Q9LIR8
description F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1
trembl
ID A0A067L7K8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02077 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at3g23880-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24045: 360701-360884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_390 0.0 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
2 Hb_007508_090 0.0602455131 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
3 Hb_000840_250 0.073291046 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
4 Hb_001159_110 0.0740751322 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
5 Hb_007532_030 0.0767491368 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
6 Hb_001014_030 0.0799976863 - - ATP binding protein, putative [Ricinus communis]
7 Hb_003371_090 0.0808628773 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
8 Hb_000213_100 0.0876903648 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
9 Hb_032278_030 0.0893013358 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_000710_060 0.089479879 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
11 Hb_000189_560 0.0902080835 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
12 Hb_000866_170 0.090616696 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_001892_020 0.0920314263 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
14 Hb_000185_030 0.0939471185 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
15 Hb_001633_210 0.0943453109 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
16 Hb_002218_010 0.096022089 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
17 Hb_000614_250 0.0961437935 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
18 Hb_009178_030 0.0971450189 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010883_090 0.0980034282 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
20 Hb_000297_010 0.0987696472 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_390 Hb_000230_390 Hb_007508_090 Hb_007508_090 Hb_000230_390--Hb_007508_090 Hb_000840_250 Hb_000840_250 Hb_000230_390--Hb_000840_250 Hb_001159_110 Hb_001159_110 Hb_000230_390--Hb_001159_110 Hb_007532_030 Hb_007532_030 Hb_000230_390--Hb_007532_030 Hb_001014_030 Hb_001014_030 Hb_000230_390--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_000230_390--Hb_003371_090 Hb_007508_090--Hb_003371_090 Hb_007508_090--Hb_007532_030 Hb_000710_060 Hb_000710_060 Hb_007508_090--Hb_000710_060 Hb_000189_560 Hb_000189_560 Hb_007508_090--Hb_000189_560 Hb_000213_100 Hb_000213_100 Hb_007508_090--Hb_000213_100 Hb_001633_210 Hb_001633_210 Hb_000840_250--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_000840_250--Hb_000614_250 Hb_000297_010 Hb_000297_010 Hb_000840_250--Hb_000297_010 Hb_000840_250--Hb_001014_030 Hb_000185_030 Hb_000185_030 Hb_000840_250--Hb_000185_030 Hb_005074_030 Hb_005074_030 Hb_001159_110--Hb_005074_030 Hb_001159_110--Hb_000614_250 Hb_004453_050 Hb_004453_050 Hb_001159_110--Hb_004453_050 Hb_000430_020 Hb_000430_020 Hb_001159_110--Hb_000430_020 Hb_001159_110--Hb_007508_090 Hb_009178_030 Hb_009178_030 Hb_007532_030--Hb_009178_030 Hb_002218_010 Hb_002218_010 Hb_007532_030--Hb_002218_010 Hb_004907_110 Hb_004907_110 Hb_007532_030--Hb_004907_110 Hb_008725_260 Hb_008725_260 Hb_007532_030--Hb_008725_260 Hb_007532_030--Hb_000189_560 Hb_000003_250 Hb_000003_250 Hb_001014_030--Hb_000003_250 Hb_001014_030--Hb_001633_210 Hb_001014_030--Hb_000614_250 Hb_001014_030--Hb_000297_010 Hb_002450_020 Hb_002450_020 Hb_001014_030--Hb_002450_020 Hb_000041_100 Hb_000041_100 Hb_003371_090--Hb_000041_100 Hb_003371_090--Hb_000213_100 Hb_003371_090--Hb_002450_020 Hb_003371_090--Hb_000710_060 Hb_003371_090--Hb_000297_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1988 21.2058 6.32807 13.5176 7.16744 14.0319
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5898 15.7709 26.7694 14.2872 7.708

CAGE analysis