Hb_000230_400

Information

Type -
Description -
Location Contig230: 377103-381242
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20440g
description POPTRDRAFT_1085734; hypothetical protein
nr
ID XP_012069486.1
description PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q944H2
description Protein ABCI12, chloroplastic OS=Arabidopsis thaliana GN=ABCI12 PE=2 SV=1
trembl
ID B9HMA8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s20440g PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24046: 377085-381183 , PASA_asmbl_24047: 381777-382034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_400 0.0 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_005588_080 0.0551142566 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
3 Hb_000375_390 0.0660941378 - - poly-A binding protein, putative [Ricinus communis]
4 Hb_000292_100 0.0661973263 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
5 Hb_001623_270 0.0691450432 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
6 Hb_000059_380 0.069228175 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
7 Hb_000035_090 0.0734762756 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
8 Hb_000347_250 0.0758569394 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
9 Hb_002435_100 0.0773835667 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF217 [Jatropha curcas]
10 Hb_001377_190 0.0784211662 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
11 Hb_000023_260 0.0784851513 - - PREDICTED: monogalactosyldiacylglycerol synthase, chloroplastic [Jatropha curcas]
12 Hb_003428_010 0.0792098415 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
13 Hb_014834_150 0.0796511162 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_002205_230 0.0807228371 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
15 Hb_000363_310 0.0822766199 - - DNA topoisomerase type I, putative [Ricinus communis]
16 Hb_009296_070 0.0830516979 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
17 Hb_011930_020 0.0833539191 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
18 Hb_021374_030 0.083774056 - - hypothetical protein RCOM_0351490 [Ricinus communis]
19 Hb_000749_010 0.08403545 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
20 Hb_007254_020 0.0845506905 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_400 Hb_000230_400 Hb_005588_080 Hb_005588_080 Hb_000230_400--Hb_005588_080 Hb_000375_390 Hb_000375_390 Hb_000230_400--Hb_000375_390 Hb_000292_100 Hb_000292_100 Hb_000230_400--Hb_000292_100 Hb_001623_270 Hb_001623_270 Hb_000230_400--Hb_001623_270 Hb_000059_380 Hb_000059_380 Hb_000230_400--Hb_000059_380 Hb_000035_090 Hb_000035_090 Hb_000230_400--Hb_000035_090 Hb_005588_080--Hb_000059_380 Hb_003428_010 Hb_003428_010 Hb_005588_080--Hb_003428_010 Hb_003513_010 Hb_003513_010 Hb_005588_080--Hb_003513_010 Hb_003861_060 Hb_003861_060 Hb_005588_080--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_005588_080--Hb_007007_120 Hb_000023_260 Hb_000023_260 Hb_000375_390--Hb_000023_260 Hb_000061_180 Hb_000061_180 Hb_000375_390--Hb_000061_180 Hb_000375_390--Hb_000035_090 Hb_000347_430 Hb_000347_430 Hb_000375_390--Hb_000347_430 Hb_021374_030 Hb_021374_030 Hb_000375_390--Hb_021374_030 Hb_000347_250 Hb_000347_250 Hb_000292_100--Hb_000347_250 Hb_007254_020 Hb_007254_020 Hb_000292_100--Hb_007254_020 Hb_002435_100 Hb_002435_100 Hb_000292_100--Hb_002435_100 Hb_000029_060 Hb_000029_060 Hb_000292_100--Hb_000029_060 Hb_000086_420 Hb_000086_420 Hb_000292_100--Hb_000086_420 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_183433_010 Hb_183433_010 Hb_001623_270--Hb_183433_010 Hb_000789_320 Hb_000789_320 Hb_001623_270--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_002205_230 Hb_002205_230 Hb_000059_380--Hb_002205_230 Hb_010068_080 Hb_010068_080 Hb_000059_380--Hb_010068_080 Hb_000059_380--Hb_007007_120 Hb_000699_030 Hb_000699_030 Hb_000059_380--Hb_000699_030 Hb_073973_090 Hb_073973_090 Hb_000035_090--Hb_073973_090 Hb_002876_300 Hb_002876_300 Hb_000035_090--Hb_002876_300 Hb_000035_090--Hb_002435_100 Hb_003098_070 Hb_003098_070 Hb_000035_090--Hb_003098_070 Hb_000169_020 Hb_000169_020 Hb_000035_090--Hb_000169_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.39059 8.37725 10.2342 7.73509 6.46209 4.98149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42079 9.2209 5.81207 5.4012 12.2693

CAGE analysis