Hb_000230_410

Information

Type -
Description -
Location Contig230: 381454-382373
Sequence    

Annotation

kegg
ID rcu:RCOM_0678360
description hypothetical protein
nr
ID XP_012069489.1
description PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KVA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02080 PE=4 SV=1
Gene Ontology
ID GO:0005739
description awpm-19-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24047: 381777-382034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_410 0.0 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
2 Hb_000009_280 0.0508137558 - - Calmodulin, putative [Ricinus communis]
3 Hb_002874_200 0.0635441344 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
4 Hb_004032_290 0.0717206189 - - protein binding protein, putative [Ricinus communis]
5 Hb_009783_010 0.0763403143 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
6 Hb_007185_050 0.077041839 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
7 Hb_001136_040 0.079161939 - - amino acid transporter, putative [Ricinus communis]
8 Hb_000680_060 0.0793320492 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
9 Hb_000395_310 0.0828423679 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_002388_070 0.0840419243 - - ring finger protein, putative [Ricinus communis]
11 Hb_004650_120 0.0853756904 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
12 Hb_004020_030 0.0865671938 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
13 Hb_000676_230 0.093040999 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
14 Hb_036520_030 0.0931203017 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
15 Hb_000358_060 0.0945742505 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
16 Hb_000866_130 0.0957713319 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
17 Hb_001898_040 0.0986513859 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_002997_150 0.0989420502 - - hypothetical protein RCOM_1406750 [Ricinus communis]
19 Hb_009070_020 0.1006959934 - - PREDICTED: uncharacterized protein LOC102612959 [Citrus sinensis]
20 Hb_000903_040 0.102033289 - - PREDICTED: pirin-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000230_410 Hb_000230_410 Hb_000009_280 Hb_000009_280 Hb_000230_410--Hb_000009_280 Hb_002874_200 Hb_002874_200 Hb_000230_410--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_000230_410--Hb_004032_290 Hb_009783_010 Hb_009783_010 Hb_000230_410--Hb_009783_010 Hb_007185_050 Hb_007185_050 Hb_000230_410--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_000230_410--Hb_001136_040 Hb_000009_280--Hb_007185_050 Hb_004650_120 Hb_004650_120 Hb_000009_280--Hb_004650_120 Hb_000009_280--Hb_001136_040 Hb_000009_280--Hb_004032_290 Hb_000009_280--Hb_002874_200 Hb_002388_070 Hb_002388_070 Hb_002874_200--Hb_002388_070 Hb_002874_200--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_002874_200--Hb_000395_310 Hb_002874_200--Hb_007185_050 Hb_002874_200--Hb_001136_040 Hb_036520_030 Hb_036520_030 Hb_004032_290--Hb_036520_030 Hb_004032_290--Hb_007185_050 Hb_000676_230 Hb_000676_230 Hb_004032_290--Hb_000676_230 Hb_004032_290--Hb_000395_310 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_001898_040 Hb_001898_040 Hb_009783_010--Hb_001898_040 Hb_012132_050 Hb_012132_050 Hb_009783_010--Hb_012132_050 Hb_009783_010--Hb_001136_040 Hb_001136_160 Hb_001136_160 Hb_009783_010--Hb_001136_160 Hb_009783_010--Hb_007185_050 Hb_007185_050--Hb_001136_040 Hb_007185_050--Hb_001898_040 Hb_001136_040--Hb_001136_160 Hb_001136_040--Hb_001898_040 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0803843 1.44592 4.1798 14.6746 0.0404284 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0731946 0 0.329161 5.99964

CAGE analysis