Hb_000230_420

Information

Type -
Description -
Location Contig230: 383738-388967
Sequence    

Annotation

kegg
ID pop:POPTR_0008s20460g
description POPTRDRAFT_820914; glutamine synthetase family protein
nr
ID AKA60251.1
description GS [Hevea brasiliensis subsp. brasiliensis]
swissprot
ID P15102
description Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1
trembl
ID A9PF02
description Glutamine synthetase OS=Populus trichocarpa GN=POPTR_0008s20460g PE=2 SV=1
Gene Ontology
ID GO:0004356
description glutamine synthetase leaf chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24048: 384092-389014 , PASA_asmbl_24049: 383875-389061 , PASA_asmbl_24050: 387903-389014 , PASA_asmbl_24051: 385270-385415
cDNA
(Sanger)
(ID:Location)		 007_G20.ab1: 386281-388235

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_420 0.0 - - GS [Hevea brasiliensis subsp. brasiliensis]
2 Hb_001292_030 0.0423530148 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
3 Hb_000531_100 0.0489510204 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
4 Hb_002534_020 0.0594509393 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
5 Hb_000083_180 0.0594566894 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
6 Hb_001277_350 0.0601683908 - - early light-induced protein, putative [Ricinus communis]
7 Hb_003038_060 0.0636712362 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
8 Hb_001717_060 0.0640022613 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
9 Hb_013405_110 0.0641660676 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_001006_040 0.0648586784 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
11 Hb_000589_340 0.0658257666 - - unknown [Populus trichocarpa x Populus deltoides]
12 Hb_146225_020 0.0662506128 - - chlorophyll A/B binding protein, putative [Ricinus communis]
13 Hb_117807_020 0.0664832044 - - methyltransferase, putative [Ricinus communis]
14 Hb_002785_040 0.0673870467 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
15 Hb_013726_060 0.0678077009 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
16 Hb_002785_030 0.0678690263 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
17 Hb_001322_120 0.0696611571 - - nutrient reservoir, putative [Ricinus communis]
18 Hb_001958_060 0.070075148 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
19 Hb_005276_080 0.0705703976 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
20 Hb_008195_070 0.0710830331 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_420 Hb_000230_420 Hb_001292_030 Hb_001292_030 Hb_000230_420--Hb_001292_030 Hb_000531_100 Hb_000531_100 Hb_000230_420--Hb_000531_100 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_000083_180 Hb_000083_180 Hb_000230_420--Hb_000083_180 Hb_001277_350 Hb_001277_350 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060 Hb_001006_040 Hb_001006_040 Hb_001292_030--Hb_001006_040 Hb_002785_030 Hb_002785_030 Hb_001292_030--Hb_002785_030 Hb_001322_120 Hb_001322_120 Hb_001292_030--Hb_001322_120 Hb_006570_030 Hb_006570_030 Hb_001292_030--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100 Hb_013726_060 Hb_013726_060 Hb_000531_100--Hb_013726_060 Hb_000531_100--Hb_001292_030 Hb_002529_120 Hb_002529_120 Hb_000531_100--Hb_002529_120 Hb_000531_100--Hb_001322_120 Hb_005276_080 Hb_005276_080 Hb_000531_100--Hb_005276_080 Hb_002534_020--Hb_001277_350 Hb_146255_030 Hb_146255_030 Hb_002534_020--Hb_146255_030 Hb_000497_050 Hb_000497_050 Hb_002534_020--Hb_000497_050 Hb_002752_020 Hb_002752_020 Hb_002534_020--Hb_002752_020 Hb_011724_040 Hb_011724_040 Hb_002534_020--Hb_011724_040 Hb_004032_400 Hb_004032_400 Hb_002534_020--Hb_004032_400 Hb_003020_120 Hb_003020_120 Hb_000083_180--Hb_003020_120 Hb_001006_160 Hb_001006_160 Hb_000083_180--Hb_001006_160 Hb_000676_320 Hb_000676_320 Hb_000083_180--Hb_000676_320 Hb_117807_020 Hb_117807_020 Hb_000083_180--Hb_117807_020 Hb_000083_180--Hb_005276_080 Hb_001277_350--Hb_000497_050 Hb_001277_350--Hb_002752_020 Hb_001277_350--Hb_146255_030 Hb_001958_060 Hb_001958_060 Hb_001277_350--Hb_001958_060 Hb_001277_350--Hb_001975_100 Hb_001717_060 Hb_001717_060 Hb_003038_060--Hb_001717_060 Hb_001862_040 Hb_001862_040 Hb_003038_060--Hb_001862_040 Hb_013405_110 Hb_013405_110 Hb_003038_060--Hb_013405_110 Hb_002785_040 Hb_002785_040 Hb_003038_060--Hb_002785_040 Hb_003038_060--Hb_000531_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.219624 13.8156 340.366 125.601 0.545785 0.930114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.463591 0.165807 0 1.30537 554.378

CAGE analysis