Hb_000230_470

Information

Type -
Description -
Location Contig230: 423904-429232
Sequence    

Annotation

kegg
ID rcu:RCOM_0678200
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_012069505.1
description PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
swissprot
ID Q8W4J2
description Mitogen-activated protein kinase 16 OS=Arabidopsis thaliana GN=MPK16 PE=2 SV=2
trembl
ID A0A067KYM8
description Mitogen-activated protein kinase OS=Jatropha curcas GN=JCGZ_02086 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24058: 424191-429516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_470 0.0 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
2 Hb_005408_100 0.0838825252 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
3 Hb_002909_100 0.0844250237 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
4 Hb_000753_120 0.0908890586 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
5 Hb_003912_080 0.0967476336 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_000320_270 0.1079890896 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
7 Hb_002686_210 0.1082818517 - - zinc finger protein, putative [Ricinus communis]
8 Hb_001948_090 0.1095139418 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
9 Hb_000196_010 0.1176443988 - - Patellin-5, putative [Ricinus communis]
10 Hb_004013_020 0.1266240648 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
11 Hb_009745_010 0.1338886852 - - cellulose synthase-like protein [Populus tomentosa]
12 Hb_004678_010 0.13613239 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
13 Hb_000336_180 0.1366332454 - - conserved hypothetical protein [Ricinus communis]
14 Hb_052117_010 0.1371611528 - - kinase, putative [Ricinus communis]
15 Hb_000109_190 0.1407156623 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
16 Hb_001102_200 0.1425455485 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1 [Jatropha curcas]
17 Hb_001898_020 0.1431781423 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
18 Hb_031089_050 0.1437585192 - - kinase, putative [Ricinus communis]
19 Hb_001999_320 0.1451922407 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
20 Hb_132840_030 0.1455997418 transcription factor TF Family: MYB-related lhy1 [Populus tremula]

Gene co-expression network

sample Hb_000230_470 Hb_000230_470 Hb_005408_100 Hb_005408_100 Hb_000230_470--Hb_005408_100 Hb_002909_100 Hb_002909_100 Hb_000230_470--Hb_002909_100 Hb_000753_120 Hb_000753_120 Hb_000230_470--Hb_000753_120 Hb_003912_080 Hb_003912_080 Hb_000230_470--Hb_003912_080 Hb_000320_270 Hb_000320_270 Hb_000230_470--Hb_000320_270 Hb_002686_210 Hb_002686_210 Hb_000230_470--Hb_002686_210 Hb_000109_190 Hb_000109_190 Hb_005408_100--Hb_000109_190 Hb_005408_100--Hb_002909_100 Hb_005408_100--Hb_000320_270 Hb_002740_100 Hb_002740_100 Hb_005408_100--Hb_002740_100 Hb_005408_100--Hb_000753_120 Hb_000196_010 Hb_000196_010 Hb_002909_100--Hb_000196_010 Hb_002909_100--Hb_003912_080 Hb_009745_010 Hb_009745_010 Hb_002909_100--Hb_009745_010 Hb_002909_100--Hb_000753_120 Hb_004013_020 Hb_004013_020 Hb_000753_120--Hb_004013_020 Hb_031089_050 Hb_031089_050 Hb_000753_120--Hb_031089_050 Hb_001948_090 Hb_001948_090 Hb_000753_120--Hb_001948_090 Hb_001999_320 Hb_001999_320 Hb_003912_080--Hb_001999_320 Hb_004678_010 Hb_004678_010 Hb_003912_080--Hb_004678_010 Hb_003912_080--Hb_001948_090 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_000320_270--Hb_001948_090 Hb_001102_200 Hb_001102_200 Hb_000320_270--Hb_001102_200 Hb_000320_270--Hb_003912_080 Hb_012308_050 Hb_012308_050 Hb_000320_270--Hb_012308_050 Hb_000100_210 Hb_000100_210 Hb_002686_210--Hb_000100_210 Hb_002686_210--Hb_005408_100 Hb_001522_040 Hb_001522_040 Hb_002686_210--Hb_001522_040 Hb_029748_020 Hb_029748_020 Hb_002686_210--Hb_029748_020 Hb_002686_210--Hb_000196_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4944 35.5372 20.0231 34.4288 2.97453 3.85774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.84236 1.38956 1.81351 8.05732 27.0234

CAGE analysis