Hb_000230_480

Information

Type -
Description -
Location Contig230: 431675-446570
Sequence    

Annotation

kegg
ID rcu:RCOM_0678170
description endo-1,3-1,4-beta-d-glucanase, putative
nr
ID XP_012069506.1
description PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Jatropha curcas]
swissprot
ID Q9ZT66
description Endo-1,3;1,4-beta-D-glucanase OS=Zea mays PE=1 SV=1
trembl
ID A0A067L7L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02087 PE=4 SV=1
Gene Ontology
ID GO:0016787
description endo- -beta-d-glucanase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24061: 431579-431725 , PASA_asmbl_24062: 431753-446547 , PASA_asmbl_24063: 431753-446547 , PASA_asmbl_24064: 445749-446547 , PASA_asmbl_24065: 441291-446547 , PASA_asmbl_24066: 446840-447254
cDNA
(Sanger)
(ID:Location)		 001_I09.ab1: 432032-445812 , 001_O11.ab1: 432035-445749 , 004_M03.ab1: 432108-445774 , 012_D07.ab1: 432135-445836 , 015_N14.ab1: 439920-445774 , 018_K13.ab1: 432125-445812 , 023_I07.ab1: 439951-445801 , 025_B17.ab1: 432035-445794

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_480 0.0 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Jatropha curcas]
2 Hb_007894_210 0.1513722037 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
3 Hb_000062_360 0.1528572517 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
4 Hb_001322_020 0.161518506 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
5 Hb_000345_260 0.1621323799 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
6 Hb_011386_050 0.1647173801 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
7 Hb_000364_100 0.1656751375 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
8 Hb_000211_100 0.1665212286 - - PREDICTED: biotin synthase [Jatropha curcas]
9 Hb_000123_140 0.1702384595 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
10 Hb_000363_350 0.1711160092 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
11 Hb_000345_290 0.1719174669 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000186_300 0.1744652908 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
13 Hb_029695_080 0.1762522463 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
14 Hb_001307_190 0.1770275739 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_009476_130 0.1784710459 - - hypothetical protein VITISV_005430 [Vitis vinifera]
16 Hb_001396_210 0.1790377419 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000211_040 0.1807024582 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
18 Hb_004108_210 0.1810741166 - - phenazine biosynthesis protein, putative [Ricinus communis]
19 Hb_014231_020 0.1811457601 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
20 Hb_003470_040 0.1816467661 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000230_480 Hb_000230_480 Hb_007894_210 Hb_007894_210 Hb_000230_480--Hb_007894_210 Hb_000062_360 Hb_000062_360 Hb_000230_480--Hb_000062_360 Hb_001322_020 Hb_001322_020 Hb_000230_480--Hb_001322_020 Hb_000345_260 Hb_000345_260 Hb_000230_480--Hb_000345_260 Hb_011386_050 Hb_011386_050 Hb_000230_480--Hb_011386_050 Hb_000364_100 Hb_000364_100 Hb_000230_480--Hb_000364_100 Hb_005389_100 Hb_005389_100 Hb_007894_210--Hb_005389_100 Hb_001699_210 Hb_001699_210 Hb_007894_210--Hb_001699_210 Hb_001005_160 Hb_001005_160 Hb_007894_210--Hb_001005_160 Hb_007894_210--Hb_001322_020 Hb_015292_040 Hb_015292_040 Hb_007894_210--Hb_015292_040 Hb_163591_010 Hb_163591_010 Hb_007894_210--Hb_163591_010 Hb_001369_030 Hb_001369_030 Hb_000062_360--Hb_001369_030 Hb_000212_300 Hb_000212_300 Hb_000062_360--Hb_000212_300 Hb_000062_360--Hb_001322_020 Hb_004267_060 Hb_004267_060 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040 Hb_000959_220 Hb_000959_220 Hb_001322_020--Hb_000959_220 Hb_001322_020--Hb_003470_040 Hb_029695_080 Hb_029695_080 Hb_001322_020--Hb_029695_080 Hb_003506_030 Hb_003506_030 Hb_001322_020--Hb_003506_030 Hb_014231_020 Hb_014231_020 Hb_001322_020--Hb_014231_020 Hb_000987_100 Hb_000987_100 Hb_000345_260--Hb_000987_100 Hb_002107_090 Hb_002107_090 Hb_000345_260--Hb_002107_090 Hb_004117_190 Hb_004117_190 Hb_000345_260--Hb_004117_190 Hb_001195_640 Hb_001195_640 Hb_000345_260--Hb_001195_640 Hb_002411_060 Hb_002411_060 Hb_000345_260--Hb_002411_060 Hb_004994_080 Hb_004994_080 Hb_011386_050--Hb_004994_080 Hb_000340_130 Hb_000340_130 Hb_011386_050--Hb_000340_130 Hb_002027_320 Hb_002027_320 Hb_011386_050--Hb_002027_320 Hb_006555_040 Hb_006555_040 Hb_011386_050--Hb_006555_040 Hb_007263_010 Hb_007263_010 Hb_011386_050--Hb_007263_010 Hb_011386_050--Hb_000364_100 Hb_000532_100 Hb_000532_100 Hb_000364_100--Hb_000532_100 Hb_000364_100--Hb_004994_080 Hb_000826_030 Hb_000826_030 Hb_000364_100--Hb_000826_030 Hb_001158_160 Hb_001158_160 Hb_000364_100--Hb_001158_160 Hb_000284_130 Hb_000284_130 Hb_000364_100--Hb_000284_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.0658 96.421 310.937 103.498 71.85 59.1057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.295 51.8437 2.3509 96.1676 65.9396

CAGE analysis