Hb_000230_500

Information

Type -
Description -
Location Contig230: 473956-476082
Sequence    

Annotation

kegg
ID rcu:RCOM_0678120
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012069511.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
swissprot
ID P0C8Q8
description Pentatricopeptide repeat-containing protein At5g19020, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
trembl
ID A0A067L7M3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02092 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 037_A03.ab1: 475371-476122 , 046_F14.ab1: 475480-476122

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_500 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
2 Hb_005188_020 0.0655908362 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
3 Hb_000041_100 0.0712948602 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
4 Hb_003371_090 0.0731253799 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
5 Hb_002988_040 0.0787381688 - - -
6 Hb_030565_030 0.080382593 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
7 Hb_004208_030 0.0830969915 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
8 Hb_001405_070 0.0858028451 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
9 Hb_002110_150 0.0897173195 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
10 Hb_002450_020 0.0899915041 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
11 Hb_002316_150 0.0904452012 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
12 Hb_005463_100 0.0927414665 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
13 Hb_009382_010 0.0934420942 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_006718_020 0.0937214307 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
15 Hb_000172_110 0.0938409063 - - -
16 Hb_001318_270 0.0945681679 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
17 Hb_000676_010 0.0950374643 - - PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Jatropha curcas]
18 Hb_002311_360 0.0956331739 - - PREDICTED: uncharacterized protein LOC105114273 [Populus euphratica]
19 Hb_001247_250 0.0964926985 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
20 Hb_002818_030 0.0970067957 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_500 Hb_000230_500 Hb_005188_020 Hb_005188_020 Hb_000230_500--Hb_005188_020 Hb_000041_100 Hb_000041_100 Hb_000230_500--Hb_000041_100 Hb_003371_090 Hb_003371_090 Hb_000230_500--Hb_003371_090 Hb_002988_040 Hb_002988_040 Hb_000230_500--Hb_002988_040 Hb_030565_030 Hb_030565_030 Hb_000230_500--Hb_030565_030 Hb_004208_030 Hb_004208_030 Hb_000230_500--Hb_004208_030 Hb_005188_020--Hb_030565_030 Hb_005188_020--Hb_000041_100 Hb_004374_070 Hb_004374_070 Hb_005188_020--Hb_004374_070 Hb_001318_270 Hb_001318_270 Hb_005188_020--Hb_001318_270 Hb_005188_020--Hb_003371_090 Hb_000041_100--Hb_003371_090 Hb_002450_020 Hb_002450_020 Hb_000041_100--Hb_002450_020 Hb_000297_010 Hb_000297_010 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_000213_100 Hb_000213_100 Hb_003371_090--Hb_000213_100 Hb_007508_090 Hb_007508_090 Hb_003371_090--Hb_007508_090 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_003371_090--Hb_000297_010 Hb_000913_020 Hb_000913_020 Hb_002988_040--Hb_000913_020 Hb_000497_300 Hb_000497_300 Hb_002988_040--Hb_000497_300 Hb_003020_220 Hb_003020_220 Hb_002988_040--Hb_003020_220 Hb_002988_040--Hb_000041_100 Hb_005686_090 Hb_005686_090 Hb_002988_040--Hb_005686_090 Hb_000836_040 Hb_000836_040 Hb_030565_030--Hb_000836_040 Hb_020805_130 Hb_020805_130 Hb_030565_030--Hb_020805_130 Hb_001959_190 Hb_001959_190 Hb_030565_030--Hb_001959_190 Hb_009803_050 Hb_009803_050 Hb_030565_030--Hb_009803_050 Hb_013358_040 Hb_013358_040 Hb_004208_030--Hb_013358_040 Hb_001247_250 Hb_001247_250 Hb_004208_030--Hb_001247_250 Hb_002754_010 Hb_002754_010 Hb_004208_030--Hb_002754_010 Hb_002073_200 Hb_002073_200 Hb_004208_030--Hb_002073_200 Hb_000172_430 Hb_000172_430 Hb_004208_030--Hb_000172_430 Hb_002110_150 Hb_002110_150 Hb_004208_030--Hb_002110_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22929 2.13612 1.08928 1.01517 1.06672 1.1075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41258 1.94094 2.67825 1.10157 2.00187

CAGE analysis