Hb_000230_530

Information

Type -
Description -
Location Contig230: 503093-508748
Sequence    

Annotation

kegg
ID rcu:RCOM_0678080
description hypothetical protein
nr
ID XP_002516784.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q67XQ0
description DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=1 SV=1
trembl
ID B9RSR5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description duf21 domain-containing protein at4g14240-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24081: 503344-508730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_530 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_101334_020 0.0657176418 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
3 Hb_009296_020 0.0750016752 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
4 Hb_002010_090 0.0764669515 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
5 Hb_000594_060 0.1015242789 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
6 Hb_000510_190 0.1028382175 - - glutathione reductase [Hevea brasiliensis]
7 Hb_000496_130 0.1034660013 - - PREDICTED: fructokinase-1 [Jatropha curcas]
8 Hb_070624_010 0.1064173126 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
9 Hb_001434_020 0.1064719183 - - hypothetical protein RCOM_0841800 [Ricinus communis]
10 Hb_003226_090 0.1076962118 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
11 Hb_001143_100 0.1093650207 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
12 Hb_002811_200 0.1115342731 - - PREDICTED: protein IQ-DOMAIN 14-like [Jatropha curcas]
13 Hb_001390_100 0.1132222314 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
14 Hb_003529_040 0.1134075932 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
15 Hb_006816_010 0.1136247175 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002942_140 0.1139937013 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
17 Hb_007943_150 0.114127781 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
18 Hb_003680_220 0.1148043791 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
19 Hb_000500_220 0.1151797874 - - PREDICTED: intersectin-1 [Jatropha curcas]
20 Hb_001677_100 0.1153688259 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]

Gene co-expression network

sample Hb_000230_530 Hb_000230_530 Hb_101334_020 Hb_101334_020 Hb_000230_530--Hb_101334_020 Hb_009296_020 Hb_009296_020 Hb_000230_530--Hb_009296_020 Hb_002010_090 Hb_002010_090 Hb_000230_530--Hb_002010_090 Hb_000594_060 Hb_000594_060 Hb_000230_530--Hb_000594_060 Hb_000510_190 Hb_000510_190 Hb_000230_530--Hb_000510_190 Hb_000496_130 Hb_000496_130 Hb_000230_530--Hb_000496_130 Hb_001390_100 Hb_001390_100 Hb_101334_020--Hb_001390_100 Hb_003529_040 Hb_003529_040 Hb_101334_020--Hb_003529_040 Hb_001009_140 Hb_001009_140 Hb_101334_020--Hb_001009_140 Hb_017193_010 Hb_017193_010 Hb_101334_020--Hb_017193_010 Hb_101334_020--Hb_009296_020 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_009296_020--Hb_002687_200 Hb_001677_100 Hb_001677_100 Hb_009296_020--Hb_001677_100 Hb_006816_010 Hb_006816_010 Hb_002010_090--Hb_006816_010 Hb_000094_150 Hb_000094_150 Hb_002010_090--Hb_000094_150 Hb_000256_160 Hb_000256_160 Hb_002010_090--Hb_000256_160 Hb_002010_090--Hb_000510_190 Hb_011188_010 Hb_011188_010 Hb_002010_090--Hb_011188_010 Hb_000594_060--Hb_011188_010 Hb_000487_370 Hb_000487_370 Hb_000594_060--Hb_000487_370 Hb_002432_050 Hb_002432_050 Hb_000594_060--Hb_002432_050 Hb_001663_130 Hb_001663_130 Hb_000594_060--Hb_001663_130 Hb_003175_070 Hb_003175_070 Hb_000594_060--Hb_003175_070 Hb_000414_080 Hb_000414_080 Hb_000594_060--Hb_000414_080 Hb_000510_190--Hb_000487_370 Hb_000510_190--Hb_000414_080 Hb_002828_060 Hb_002828_060 Hb_000510_190--Hb_002828_060 Hb_002249_080 Hb_002249_080 Hb_000510_190--Hb_002249_080 Hb_003490_060 Hb_003490_060 Hb_000510_190--Hb_003490_060 Hb_003355_010 Hb_003355_010 Hb_000496_130--Hb_003355_010 Hb_001143_100 Hb_001143_100 Hb_000496_130--Hb_001143_100 Hb_007943_150 Hb_007943_150 Hb_000496_130--Hb_007943_150 Hb_025194_090 Hb_025194_090 Hb_000496_130--Hb_025194_090 Hb_004710_020 Hb_004710_020 Hb_000496_130--Hb_004710_020 Hb_000496_130--Hb_000510_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8572 8.55166 26.5169 13.593 3.85509 3.28187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18131 3.6533 3.05048 18.0597 21.6884

CAGE analysis