Hb_000232_040

Information

Type transcription factor
Description TF Family: NAC
Location Contig232: 83299-86509
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05450g
description no apical meristem family protein
nr
ID XP_011047785.1
description PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
swissprot
ID Q9FFI5
description NAC domain-containing protein 86 OS=Arabidopsis thaliana GN=NAC086 PE=2 SV=1
trembl
ID U5FPE3
description No apical meristem family protein OS=Populus trichocarpa GN=POPTR_0015s05450g PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24395: 83371-85831 , PASA_asmbl_24396: 86247-86444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000232_040 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X2 [Populus euphratica]
2 Hb_000917_300 0.069359139 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
3 Hb_002062_010 0.0734881863 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
4 Hb_001048_010 0.0756058211 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]
5 Hb_002119_100 0.0759995781 - - cytochrome B561, putative [Ricinus communis]
6 Hb_004459_010 0.0770709976 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
7 Hb_001981_050 0.0860177551 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
8 Hb_136408_040 0.0866265102 - - PREDICTED: protein NDR1 [Jatropha curcas]
9 Hb_000318_310 0.0894161888 - - hypothetical protein POPTR_0009s11190g [Populus trichocarpa]
10 Hb_000915_170 0.0899241432 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
11 Hb_000031_180 0.0925433349 - - sarcosine oxidase, putative [Ricinus communis]
12 Hb_005532_030 0.0949800722 - - DNA binding protein, putative [Ricinus communis]
13 Hb_007483_090 0.0957118018 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003855_060 0.0958804191 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
15 Hb_185811_010 0.0964719396 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
16 Hb_128986_010 0.0970106959 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003723_050 0.0972673645 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010589_010 0.0973971323 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
19 Hb_095744_010 0.0987458289 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
20 Hb_002740_050 0.0990762744 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]

Gene co-expression network

sample Hb_000232_040 Hb_000232_040 Hb_000917_300 Hb_000917_300 Hb_000232_040--Hb_000917_300 Hb_002062_010 Hb_002062_010 Hb_000232_040--Hb_002062_010 Hb_001048_010 Hb_001048_010 Hb_000232_040--Hb_001048_010 Hb_002119_100 Hb_002119_100 Hb_000232_040--Hb_002119_100 Hb_004459_010 Hb_004459_010 Hb_000232_040--Hb_004459_010 Hb_001981_050 Hb_001981_050 Hb_000232_040--Hb_001981_050 Hb_000917_300--Hb_004459_010 Hb_000917_300--Hb_001981_050 Hb_000318_310 Hb_000318_310 Hb_000917_300--Hb_000318_310 Hb_185811_010 Hb_185811_010 Hb_000917_300--Hb_185811_010 Hb_132880_010 Hb_132880_010 Hb_000917_300--Hb_132880_010 Hb_128986_010 Hb_128986_010 Hb_002062_010--Hb_128986_010 Hb_015561_010 Hb_015561_010 Hb_002062_010--Hb_015561_010 Hb_000017_180 Hb_000017_180 Hb_002062_010--Hb_000017_180 Hb_005656_120 Hb_005656_120 Hb_002062_010--Hb_005656_120 Hb_003417_050 Hb_003417_050 Hb_002062_010--Hb_003417_050 Hb_002062_010--Hb_002119_100 Hb_001048_010--Hb_000917_300 Hb_001048_010--Hb_004459_010 Hb_010172_040 Hb_010172_040 Hb_001048_010--Hb_010172_040 Hb_000421_040 Hb_000421_040 Hb_001048_010--Hb_000421_040 Hb_010589_010 Hb_010589_010 Hb_001048_010--Hb_010589_010 Hb_007483_090 Hb_007483_090 Hb_002119_100--Hb_007483_090 Hb_000329_780 Hb_000329_780 Hb_002119_100--Hb_000329_780 Hb_002119_100--Hb_003417_050 Hb_002740_050 Hb_002740_050 Hb_002119_100--Hb_002740_050 Hb_002119_100--Hb_015561_010 Hb_001278_120 Hb_001278_120 Hb_004459_010--Hb_001278_120 Hb_004459_010--Hb_001981_050 Hb_003855_060 Hb_003855_060 Hb_004459_010--Hb_003855_060 Hb_095744_010 Hb_095744_010 Hb_004459_010--Hb_095744_010 Hb_004459_010--Hb_000318_310 Hb_001981_050--Hb_185811_010 Hb_001981_050--Hb_000318_310 Hb_001981_050--Hb_003855_060 Hb_007904_150 Hb_007904_150 Hb_001981_050--Hb_007904_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0383185 0.220258 2.71441 5.51424 0.0857564 0.026962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0223525 5.85176

CAGE analysis