Hb_000233_060

Information

Type -
Description -
Location Contig233: 54600-58395
Sequence    

Annotation

kegg
ID rcu:RCOM_1045160
description (+)-delta-cadinene synthase isozyme A, putative (EC:4.2.3.13)
nr
ID KDP31568.1
description hypothetical protein JCGZ_14793 [Jatropha curcas]
swissprot
ID B9SBV6
description Probable terpene synthase 3 OS=Ricinus communis GN=TPS3 PE=3 SV=1
trembl
ID A0A067K963
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14793 PE=4 SV=1
Gene Ontology
ID GO:0016829
description probable terpene synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000233_060 0.0 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
2 Hb_000035_360 0.0744842085 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
3 Hb_066262_010 0.0940299043 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
4 Hb_001331_050 0.0982911913 - - hypothetical protein VITISV_022439 [Vitis vinifera]
5 Hb_066262_020 0.1002956972 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
6 Hb_011924_030 0.1006798926 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002067_110 0.101380223 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
8 Hb_000844_020 0.1023150501 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
9 Hb_045810_010 0.1029170452 - - PREDICTED: laccase-12-like [Jatropha curcas]
10 Hb_005396_100 0.1034724348 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000284_060 0.1040270949 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
12 Hb_005643_010 0.1045070798 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_064855_010 0.1063608234 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_007785_020 0.1071439928 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_008707_020 0.1135265384 - - ATP binding protein, putative [Ricinus communis]
16 Hb_006616_050 0.113568825 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
17 Hb_000796_100 0.1182392976 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_006353_010 0.1194960375 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
19 Hb_000871_020 0.1197539155 - - receptor-kinase, putative [Ricinus communis]
20 Hb_003847_140 0.1199330434 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000233_060 Hb_000233_060 Hb_000035_360 Hb_000035_360 Hb_000233_060--Hb_000035_360 Hb_066262_010 Hb_066262_010 Hb_000233_060--Hb_066262_010 Hb_001331_050 Hb_001331_050 Hb_000233_060--Hb_001331_050 Hb_066262_020 Hb_066262_020 Hb_000233_060--Hb_066262_020 Hb_011924_030 Hb_011924_030 Hb_000233_060--Hb_011924_030 Hb_002067_110 Hb_002067_110 Hb_000233_060--Hb_002067_110 Hb_008707_020 Hb_008707_020 Hb_000035_360--Hb_008707_020 Hb_000035_360--Hb_011924_030 Hb_001376_020 Hb_001376_020 Hb_000035_360--Hb_001376_020 Hb_000284_060 Hb_000284_060 Hb_000035_360--Hb_000284_060 Hb_000035_360--Hb_001331_050 Hb_003847_140 Hb_003847_140 Hb_066262_010--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_066262_010--Hb_000656_360 Hb_000879_100 Hb_000879_100 Hb_066262_010--Hb_000879_100 Hb_005643_010 Hb_005643_010 Hb_066262_010--Hb_005643_010 Hb_119441_010 Hb_119441_010 Hb_066262_010--Hb_119441_010 Hb_001331_050--Hb_005643_010 Hb_001331_050--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_001331_050--Hb_000369_150 Hb_001331_050--Hb_000879_100 Hb_045810_010 Hb_045810_010 Hb_001331_050--Hb_045810_010 Hb_006351_080 Hb_006351_080 Hb_001331_050--Hb_006351_080 Hb_064855_010 Hb_064855_010 Hb_066262_020--Hb_064855_010 Hb_000844_020 Hb_000844_020 Hb_066262_020--Hb_000844_020 Hb_066262_020--Hb_002067_110 Hb_001271_040 Hb_001271_040 Hb_066262_020--Hb_001271_040 Hb_006616_050 Hb_006616_050 Hb_066262_020--Hb_006616_050 Hb_068447_010 Hb_068447_010 Hb_066262_020--Hb_068447_010 Hb_000871_020 Hb_000871_020 Hb_011924_030--Hb_000871_020 Hb_011924_030--Hb_000284_060 Hb_011924_030--Hb_003847_140 Hb_000796_100 Hb_000796_100 Hb_011924_030--Hb_000796_100 Hb_009740_010 Hb_009740_010 Hb_011924_030--Hb_009740_010 Hb_002067_110--Hb_000844_020 Hb_007785_020 Hb_007785_020 Hb_002067_110--Hb_007785_020 Hb_002067_110--Hb_064855_010 Hb_002067_110--Hb_045810_010 Hb_002067_110--Hb_001271_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140371 24.032 0.0210124 0.873945 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0246254 0 4.14815 0.257567

CAGE analysis