Hb_000233_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig233: 164437-169140
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24486: 165780-166242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000233_100 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_060909_010 0.1201168565 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
3 Hb_001408_150 0.140429511 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
4 Hb_036568_010 0.1583307628 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
5 Hb_057079_020 0.1583631963 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002475_130 0.1596477179 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
7 Hb_001410_010 0.1600443275 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
8 Hb_011310_200 0.1657459739 - - grr1, plant, putative [Ricinus communis]
9 Hb_001485_010 0.166330597 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_147873_010 0.1679558306 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
11 Hb_008226_100 0.1687632867 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_071160_010 0.1691394319 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_000532_130 0.1696163422 - - hypothetical protein [Anabaena sp. PCC 7108]
14 Hb_002218_070 0.1713450758 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
15 Hb_008175_030 0.1715532669 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
16 Hb_001921_010 0.1736402349 - - ATP-dependent RNA helicase, putative [Ricinus communis]
17 Hb_010261_030 0.1742562841 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_002739_060 0.1743864303 - - -
19 Hb_117840_010 0.1765917653 - - Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_113203_010 0.1776032788 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_000233_100 Hb_000233_100 Hb_060909_010 Hb_060909_010 Hb_000233_100--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_000233_100--Hb_001408_150 Hb_036568_010 Hb_036568_010 Hb_000233_100--Hb_036568_010 Hb_057079_020 Hb_057079_020 Hb_000233_100--Hb_057079_020 Hb_002475_130 Hb_002475_130 Hb_000233_100--Hb_002475_130 Hb_001410_010 Hb_001410_010 Hb_000233_100--Hb_001410_010 Hb_060909_010--Hb_001408_150 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_000532_130 Hb_000532_130 Hb_060909_010--Hb_000532_130 Hb_000778_020 Hb_000778_020 Hb_001408_150--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_001408_150--Hb_008175_030 Hb_002739_060 Hb_002739_060 Hb_001408_150--Hb_002739_060 Hb_001408_150--Hb_000532_130 Hb_000197_230 Hb_000197_230 Hb_001408_150--Hb_000197_230 Hb_036568_010--Hb_001410_010 Hb_001446_060 Hb_001446_060 Hb_036568_010--Hb_001446_060 Hb_000473_150 Hb_000473_150 Hb_036568_010--Hb_000473_150 Hb_000997_340 Hb_000997_340 Hb_036568_010--Hb_000997_340 Hb_036568_010--Hb_000544_020 Hb_004994_300 Hb_004994_300 Hb_036568_010--Hb_004994_300 Hb_057079_020--Hb_000778_020 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_011310_200 Hb_011310_200 Hb_057079_020--Hb_011310_200 Hb_057079_020--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_057079_020--Hb_010253_020 Hb_001921_010 Hb_001921_010 Hb_002475_130--Hb_001921_010 Hb_002739_070 Hb_002739_070 Hb_002475_130--Hb_002739_070 Hb_007259_020 Hb_007259_020 Hb_002475_130--Hb_007259_020 Hb_002232_050 Hb_002232_050 Hb_002475_130--Hb_002232_050 Hb_002475_130--Hb_000532_130 Hb_002218_070 Hb_002218_070 Hb_001410_010--Hb_002218_070 Hb_001410_010--Hb_011310_200 Hb_000236_110 Hb_000236_110 Hb_001410_010--Hb_000236_110 Hb_002928_180 Hb_002928_180 Hb_001410_010--Hb_002928_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.35647 5.4891 0.513705 1.3324 0.769499 0.920839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0165072 0 0.272735 2.74294 2.12895

CAGE analysis