Hb_000235_010

Information

Type -
Description -
Location Contig235: 34-11683
Sequence    

Annotation

kegg
ID fve:101305358
description serine carboxypeptidase-like 18-like
nr
ID XP_012075109.1
description PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
swissprot
ID Q9C7Z9
description Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2
trembl
ID A0A067KK41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10342 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000235_010 0.0 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
2 Hb_003050_070 0.1462185879 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000803_050 0.1496836742 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
4 Hb_001507_070 0.1559022318 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000453_300 0.1596609456 - - latex cystatin [Hevea brasiliensis]
6 Hb_003211_050 0.1665691931 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
7 Hb_000175_610 0.1696333252 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
8 Hb_000792_120 0.1779435283 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
9 Hb_000613_160 0.1783389597 - - coated vesicle membrane protein, putative [Ricinus communis]
10 Hb_000742_270 0.1788556469 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
11 Hb_001959_260 0.1815633273 - - -
12 Hb_011004_010 0.1824343854 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
13 Hb_003371_100 0.1842696364 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_001604_030 0.1850379691 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
15 Hb_005000_160 0.1872060445 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
16 Hb_000215_180 0.1901011418 - - hypothetical protein 17 [Hevea brasiliensis]
17 Hb_003286_020 0.1911417279 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
18 Hb_028285_030 0.1944493197 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
19 Hb_001785_040 0.1956785173 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
20 Hb_104010_010 0.1968433419 - - hypothetical protein JCGZ_26423 [Jatropha curcas]

Gene co-expression network

sample Hb_000235_010 Hb_000235_010 Hb_003050_070 Hb_003050_070 Hb_000235_010--Hb_003050_070 Hb_000803_050 Hb_000803_050 Hb_000235_010--Hb_000803_050 Hb_001507_070 Hb_001507_070 Hb_000235_010--Hb_001507_070 Hb_000453_300 Hb_000453_300 Hb_000235_010--Hb_000453_300 Hb_003211_050 Hb_003211_050 Hb_000235_010--Hb_003211_050 Hb_000175_610 Hb_000175_610 Hb_000235_010--Hb_000175_610 Hb_000714_010 Hb_000714_010 Hb_003050_070--Hb_000714_010 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_104010_010 Hb_104010_010 Hb_003050_070--Hb_104010_010 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010 Hb_026428_010 Hb_026428_010 Hb_000803_050--Hb_026428_010 Hb_000803_050--Hb_003050_070 Hb_011004_010 Hb_011004_010 Hb_000803_050--Hb_011004_010 Hb_001671_060 Hb_001671_060 Hb_000803_050--Hb_001671_060 Hb_000575_020 Hb_000575_020 Hb_000803_050--Hb_000575_020 Hb_000742_270 Hb_000742_270 Hb_001507_070--Hb_000742_270 Hb_001507_070--Hb_011004_010 Hb_003371_100 Hb_003371_100 Hb_001507_070--Hb_003371_100 Hb_148121_010 Hb_148121_010 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_000032_040 Hb_000032_040 Hb_001507_070--Hb_000032_040 Hb_012799_020 Hb_012799_020 Hb_000453_300--Hb_012799_020 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_000453_300--Hb_104010_010 Hb_004209_030 Hb_004209_030 Hb_000453_300--Hb_004209_030 Hb_000453_300--Hb_003050_070 Hb_001276_060 Hb_001276_060 Hb_003211_050--Hb_001276_060 Hb_011671_400 Hb_011671_400 Hb_003211_050--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003211_050--Hb_072912_020 Hb_003211_050--Hb_000714_010 Hb_003095_070 Hb_003095_070 Hb_003211_050--Hb_003095_070 Hb_000175_610--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_000175_610--Hb_000260_580 Hb_000175_610--Hb_003371_100 Hb_000175_610--Hb_000742_270 Hb_000175_610--Hb_001507_070 Hb_000175_610--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.09818 0.114001 2.40606 0.901918 0.857714 1.26955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1709 13.4441 9.39412 1.79722 0.044721

CAGE analysis