Hb_000235_050

Information

Type -
Description -
Location Contig235: 99131-102059
Sequence    

Annotation

kegg
ID rcu:RCOM_1048100
description hypothetical protein
nr
ID XP_002514158.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKB4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1048100 PE=4 SV=1
Gene Ontology
ID GO:0005783
description duf3456 domain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24613: 99148-99660 , PASA_asmbl_24614: 99148-99642 , PASA_asmbl_24615: 100009-100407 , PASA_asmbl_24616: 100527-100811
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000235_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000401_010 0.1005214817 - - SAB, putative [Ricinus communis]
3 Hb_003227_010 0.1136536458 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
4 Hb_010872_040 0.1196017416 - - hypothetical protein F775_31993 [Aegilops tauschii]
5 Hb_000248_100 0.132684028 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
6 Hb_005970_010 0.1349942892 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
7 Hb_008053_060 0.1386354604 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
8 Hb_000803_120 0.1404510245 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
9 Hb_012180_010 0.1408593536 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
10 Hb_000098_200 0.1417127187 - - PREDICTED: serine hydroxymethyltransferase 7-like isoform X2 [Populus euphratica]
11 Hb_002808_020 0.1419866168 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
12 Hb_000661_220 0.1467175746 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
13 Hb_003050_150 0.1481922594 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
14 Hb_158845_060 0.148652793 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
15 Hb_000297_030 0.1508034914 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
16 Hb_000157_070 0.1517153184 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
17 Hb_024758_020 0.1522918577 - - acyl-CoA binding protein 3B [Vernicia fordii]
18 Hb_001018_060 0.1534809449 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
19 Hb_103688_010 0.1547654034 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
20 Hb_000309_030 0.1566559536 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000235_050 Hb_000235_050 Hb_000401_010 Hb_000401_010 Hb_000235_050--Hb_000401_010 Hb_003227_010 Hb_003227_010 Hb_000235_050--Hb_003227_010 Hb_010872_040 Hb_010872_040 Hb_000235_050--Hb_010872_040 Hb_000248_100 Hb_000248_100 Hb_000235_050--Hb_000248_100 Hb_005970_010 Hb_005970_010 Hb_000235_050--Hb_005970_010 Hb_008053_060 Hb_008053_060 Hb_000235_050--Hb_008053_060 Hb_003050_150 Hb_003050_150 Hb_000401_010--Hb_003050_150 Hb_002235_190 Hb_002235_190 Hb_000401_010--Hb_002235_190 Hb_000205_280 Hb_000205_280 Hb_000401_010--Hb_000205_280 Hb_000297_030 Hb_000297_030 Hb_000401_010--Hb_000297_030 Hb_002025_270 Hb_002025_270 Hb_000401_010--Hb_002025_270 Hb_000220_110 Hb_000220_110 Hb_003227_010--Hb_000220_110 Hb_003227_010--Hb_010872_040 Hb_000139_140 Hb_000139_140 Hb_003227_010--Hb_000139_140 Hb_003227_010--Hb_005970_010 Hb_002808_020 Hb_002808_020 Hb_003227_010--Hb_002808_020 Hb_010872_040--Hb_005970_010 Hb_028115_010 Hb_028115_010 Hb_010872_040--Hb_028115_010 Hb_001014_190 Hb_001014_190 Hb_010872_040--Hb_001014_190 Hb_010872_040--Hb_000139_140 Hb_158845_060 Hb_158845_060 Hb_000248_100--Hb_158845_060 Hb_024758_020 Hb_024758_020 Hb_000248_100--Hb_024758_020 Hb_000094_150 Hb_000094_150 Hb_000248_100--Hb_000094_150 Hb_003964_110 Hb_003964_110 Hb_000248_100--Hb_003964_110 Hb_000248_100--Hb_003050_150 Hb_000261_310 Hb_000261_310 Hb_000248_100--Hb_000261_310 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_000000_120 Hb_000000_120 Hb_005970_010--Hb_000000_120 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_001097_040 Hb_001097_040 Hb_005970_010--Hb_001097_040 Hb_003506_020 Hb_003506_020 Hb_005970_010--Hb_003506_020 Hb_028077_020 Hb_028077_020 Hb_005970_010--Hb_028077_020 Hb_001004_140 Hb_001004_140 Hb_008053_060--Hb_001004_140 Hb_089140_040 Hb_089140_040 Hb_008053_060--Hb_089140_040 Hb_007185_040 Hb_007185_040 Hb_008053_060--Hb_007185_040 Hb_006468_010 Hb_006468_010 Hb_008053_060--Hb_006468_010 Hb_003636_080 Hb_003636_080 Hb_008053_060--Hb_003636_080 Hb_005489_140 Hb_005489_140 Hb_008053_060--Hb_005489_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.562929 1.85033 2.71326 3.65228 1.01636 1.20577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.341618 0.716825 0.170575 4.02273 1.07761

CAGE analysis