Hb_000235_070

Information

Type -
Description -
Location Contig235: 148074-160141
Sequence    

Annotation

kegg
ID rcu:RCOM_0754340
description hypothetical protein
nr
ID XP_012074039.1
description PREDICTED: VIN3-like protein 2 [Jatropha curcas]
swissprot
ID Q9SUM4
description VIN3-like protein 2 OS=Arabidopsis thaliana GN=VIL2 PE=1 SV=1
trembl
ID A0A067KJH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08655 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24617: 148245-160177 , PASA_asmbl_24618: 148289-150587 , PASA_asmbl_24620: 153815-154054
cDNA
(Sanger)
(ID:Location)		 002_D07.ab1: 148289-150422 , 009_A01.ab1: 148289-150335 , 051_L06.ab1: 148289-150338 , 051_L22.ab1: 148289-150331

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000235_070 0.0 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
2 Hb_001269_620 0.08338495 - - PREDICTED: magnesium transporter MRS2-1 isoform X1 [Populus euphratica]
3 Hb_061256_010 0.0894198935 - - PREDICTED: uncharacterized protein LOC105635220 isoform X2 [Jatropha curcas]
4 Hb_005000_080 0.0976487818 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
5 Hb_027506_040 0.1068986544 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
6 Hb_015967_030 0.1075535113 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1 [Jatropha curcas]
7 Hb_000088_260 0.1146248227 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
8 Hb_021576_150 0.1175915768 - - PREDICTED: formin-like protein 18 [Jatropha curcas]
9 Hb_001147_050 0.1181518884 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
10 Hb_005686_130 0.1183014827 rubber biosynthesis Gene Name: Isopentenyl-diphosphate delta isomerase isopentenyl pyrophosphate isomerase [Hevea brasiliensis]
11 Hb_001277_050 0.1192529065 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
12 Hb_005332_080 0.1198242427 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
13 Hb_002534_130 0.1213168983 - - membrane associated ring finger 1,8, putative [Ricinus communis]
14 Hb_006438_020 0.1250076059 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
15 Hb_000979_140 0.1263796406 - - kinase family protein [Populus trichocarpa]
16 Hb_012762_040 0.1276827264 - - big map kinase/bmk, putative [Ricinus communis]
17 Hb_004545_120 0.1281140662 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]
18 Hb_000566_050 0.129721879 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
19 Hb_007426_220 0.1301750663 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
20 Hb_002259_170 0.1306845622 - - PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000235_070 Hb_000235_070 Hb_001269_620 Hb_001269_620 Hb_000235_070--Hb_001269_620 Hb_061256_010 Hb_061256_010 Hb_000235_070--Hb_061256_010 Hb_005000_080 Hb_005000_080 Hb_000235_070--Hb_005000_080 Hb_027506_040 Hb_027506_040 Hb_000235_070--Hb_027506_040 Hb_015967_030 Hb_015967_030 Hb_000235_070--Hb_015967_030 Hb_000088_260 Hb_000088_260 Hb_000235_070--Hb_000088_260 Hb_001277_050 Hb_001277_050 Hb_001269_620--Hb_001277_050 Hb_005686_130 Hb_005686_130 Hb_001269_620--Hb_005686_130 Hb_001269_620--Hb_000088_260 Hb_049575_010 Hb_049575_010 Hb_001269_620--Hb_049575_010 Hb_001147_050 Hb_001147_050 Hb_001269_620--Hb_001147_050 Hb_006438_020 Hb_006438_020 Hb_061256_010--Hb_006438_020 Hb_001799_160 Hb_001799_160 Hb_061256_010--Hb_001799_160 Hb_000193_260 Hb_000193_260 Hb_061256_010--Hb_000193_260 Hb_001729_020 Hb_001729_020 Hb_061256_010--Hb_001729_020 Hb_021576_150 Hb_021576_150 Hb_061256_010--Hb_021576_150 Hb_003994_080 Hb_003994_080 Hb_005000_080--Hb_003994_080 Hb_000208_190 Hb_000208_190 Hb_005000_080--Hb_000208_190 Hb_138585_030 Hb_138585_030 Hb_005000_080--Hb_138585_030 Hb_000188_060 Hb_000188_060 Hb_005000_080--Hb_000188_060 Hb_001021_210 Hb_001021_210 Hb_005000_080--Hb_001021_210 Hb_000926_080 Hb_000926_080 Hb_027506_040--Hb_000926_080 Hb_000200_300 Hb_000200_300 Hb_027506_040--Hb_000200_300 Hb_011671_260 Hb_011671_260 Hb_027506_040--Hb_011671_260 Hb_000398_170 Hb_000398_170 Hb_027506_040--Hb_000398_170 Hb_003602_060 Hb_003602_060 Hb_027506_040--Hb_003602_060 Hb_000684_030 Hb_000684_030 Hb_027506_040--Hb_000684_030 Hb_007558_090 Hb_007558_090 Hb_015967_030--Hb_007558_090 Hb_000116_250 Hb_000116_250 Hb_015967_030--Hb_000116_250 Hb_015967_030--Hb_000926_080 Hb_015967_030--Hb_027506_040 Hb_015967_030--Hb_049575_010 Hb_000270_480 Hb_000270_480 Hb_000088_260--Hb_000270_480 Hb_000128_060 Hb_000128_060 Hb_000088_260--Hb_000128_060 Hb_001511_090 Hb_001511_090 Hb_000088_260--Hb_001511_090 Hb_001117_110 Hb_001117_110 Hb_000088_260--Hb_001117_110 Hb_001141_240 Hb_001141_240 Hb_000088_260--Hb_001141_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.39509 13.5853 29.8572 15.562 2.82419 3.01976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.72521 10.2779 11.0449 7.7645 18.6342

CAGE analysis