Hb_000236_090

Information

Type -
Description -
Location Contig236: 97190-102167
Sequence    

Annotation

kegg
ID pxb:103937031
description uncharacterized LOC103937031
nr
ID KCW57218.1
description hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059ATN0
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_090 0.0 - - hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
2 Hb_010128_120 0.1710938177 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
3 Hb_000504_150 0.1752106363 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
4 Hb_007348_040 0.176517286 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]
5 Hb_001009_100 0.1798116895 - - -
6 Hb_002084_040 0.1802448766 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
7 Hb_000108_080 0.189867882 - - PREDICTED: importin-5 [Jatropha curcas]
8 Hb_000832_300 0.1904860272 - - -
9 Hb_005144_030 0.1930049951 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
10 Hb_000487_220 0.1952451835 - - eukaryotic translation elongation factor, putative [Ricinus communis]
11 Hb_001811_120 0.1966203963 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
12 Hb_011798_040 0.1972855269 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
13 Hb_000162_020 0.1990798818 - - protein translocase, putative [Ricinus communis]
14 Hb_006501_020 0.1997251802 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
15 Hb_006816_410 0.2007975853 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
16 Hb_007904_180 0.2018968183 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
17 Hb_012180_040 0.202697497 - - hypothetical protein VITISV_042517 [Vitis vinifera]
18 Hb_000236_080 0.2037531182 - - PREDICTED: small subunit processome component 20 homolog [Jatropha curcas]
19 Hb_001977_010 0.2041775829 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
20 Hb_003623_030 0.2043304904 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_090 Hb_000236_090 Hb_010128_120 Hb_010128_120 Hb_000236_090--Hb_010128_120 Hb_000504_150 Hb_000504_150 Hb_000236_090--Hb_000504_150 Hb_007348_040 Hb_007348_040 Hb_000236_090--Hb_007348_040 Hb_001009_100 Hb_001009_100 Hb_000236_090--Hb_001009_100 Hb_002084_040 Hb_002084_040 Hb_000236_090--Hb_002084_040 Hb_000108_080 Hb_000108_080 Hb_000236_090--Hb_000108_080 Hb_010128_120--Hb_000108_080 Hb_001811_120 Hb_001811_120 Hb_010128_120--Hb_001811_120 Hb_004037_030 Hb_004037_030 Hb_010128_120--Hb_004037_030 Hb_000475_020 Hb_000475_020 Hb_010128_120--Hb_000475_020 Hb_007904_180 Hb_007904_180 Hb_010128_120--Hb_007904_180 Hb_031069_020 Hb_031069_020 Hb_010128_120--Hb_031069_020 Hb_000487_220 Hb_000487_220 Hb_000504_150--Hb_000487_220 Hb_004970_160 Hb_004970_160 Hb_000504_150--Hb_004970_160 Hb_003029_130 Hb_003029_130 Hb_000504_150--Hb_003029_130 Hb_001196_060 Hb_001196_060 Hb_000504_150--Hb_001196_060 Hb_000504_150--Hb_001811_120 Hb_000347_570 Hb_000347_570 Hb_000504_150--Hb_000347_570 Hb_000250_080 Hb_000250_080 Hb_007348_040--Hb_000250_080 Hb_000453_080 Hb_000453_080 Hb_007348_040--Hb_000453_080 Hb_000136_150 Hb_000136_150 Hb_007348_040--Hb_000136_150 Hb_001486_120 Hb_001486_120 Hb_007348_040--Hb_001486_120 Hb_006816_410 Hb_006816_410 Hb_007348_040--Hb_006816_410 Hb_081879_030 Hb_081879_030 Hb_007348_040--Hb_081879_030 Hb_003388_030 Hb_003388_030 Hb_001009_100--Hb_003388_030 Hb_004884_020 Hb_004884_020 Hb_001009_100--Hb_004884_020 Hb_004987_070 Hb_004987_070 Hb_001009_100--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_001009_100--Hb_000300_120 Hb_000069_320 Hb_000069_320 Hb_001009_100--Hb_000069_320 Hb_067776_020 Hb_067776_020 Hb_001009_100--Hb_067776_020 Hb_002084_040--Hb_001811_120 Hb_014497_090 Hb_014497_090 Hb_002084_040--Hb_014497_090 Hb_000363_380 Hb_000363_380 Hb_002084_040--Hb_000363_380 Hb_002084_040--Hb_007904_180 Hb_002084_040--Hb_000475_020 Hb_000096_180 Hb_000096_180 Hb_002084_040--Hb_000096_180 Hb_000108_080--Hb_031069_020 Hb_003236_010 Hb_003236_010 Hb_000108_080--Hb_003236_010 Hb_000108_080--Hb_004037_030 Hb_000640_200 Hb_000640_200 Hb_000108_080--Hb_000640_200 Hb_005462_020 Hb_005462_020 Hb_000108_080--Hb_005462_020 Hb_022250_110 Hb_022250_110 Hb_000108_080--Hb_022250_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.36124 1.80113 0.20167 0.291144 2.39843 4.67017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.512503 0.16111 0.140677 1.61971 1.86767

CAGE analysis