Hb_000236_100

Information

Type -
Description -
Location Contig236: 104563-110262
Sequence    

Annotation

kegg
ID rcu:RCOM_1017950
description hypothetical protein
nr
ID KHG03364.1
description Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0MV55
description Dynein alpha chain, flagellar outer arm OS=Gossypium arboreum GN=F383_02820 PE=4 SV=1
Gene Ontology
ID GO:0031514
description rna recognition motif-containing protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24661: 104571-105503 , PASA_asmbl_24662: 104833-106010 , PASA_asmbl_24664: 108472-108597 , PASA_asmbl_24665: 108647-109221 , PASA_asmbl_24666: 109257-109861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_100 0.0 - - Dynein alpha chain, flagellar outer arm [Gossypium arboreum]
2 Hb_001541_260 0.0645865562 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
3 Hb_004162_280 0.06813454 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
4 Hb_144787_030 0.0689262962 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
5 Hb_005245_130 0.0727536707 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
6 Hb_002027_260 0.0732136213 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
7 Hb_010222_080 0.0766439965 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
8 Hb_001541_020 0.0769852485 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
9 Hb_001014_050 0.0805784237 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
10 Hb_075481_030 0.081662288 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
11 Hb_000977_070 0.0836051049 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
12 Hb_000139_250 0.0836971593 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
13 Hb_003020_110 0.0838644737 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
14 Hb_002942_220 0.0838944723 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
15 Hb_000465_470 0.083903803 - - unknown [Picea sitchensis]
16 Hb_001141_330 0.0855367107 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
17 Hb_000224_060 0.0885529331 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
18 Hb_001736_040 0.0887924943 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
19 Hb_000946_120 0.0894657067 - - DNA binding protein, putative [Ricinus communis]
20 Hb_054865_100 0.0894815748 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_100 Hb_000236_100 Hb_001541_260 Hb_001541_260 Hb_000236_100--Hb_001541_260 Hb_004162_280 Hb_004162_280 Hb_000236_100--Hb_004162_280 Hb_144787_030 Hb_144787_030 Hb_000236_100--Hb_144787_030 Hb_005245_130 Hb_005245_130 Hb_000236_100--Hb_005245_130 Hb_002027_260 Hb_002027_260 Hb_000236_100--Hb_002027_260 Hb_010222_080 Hb_010222_080 Hb_000236_100--Hb_010222_080 Hb_001541_260--Hb_144787_030 Hb_000139_250 Hb_000139_250 Hb_001541_260--Hb_000139_250 Hb_000465_470 Hb_000465_470 Hb_001541_260--Hb_000465_470 Hb_000032_490 Hb_000032_490 Hb_001541_260--Hb_000032_490 Hb_000946_120 Hb_000946_120 Hb_001541_260--Hb_000946_120 Hb_004162_280--Hb_144787_030 Hb_175338_020 Hb_175338_020 Hb_004162_280--Hb_175338_020 Hb_001541_020 Hb_001541_020 Hb_004162_280--Hb_001541_020 Hb_000510_310 Hb_000510_310 Hb_004162_280--Hb_000510_310 Hb_004162_280--Hb_000139_250 Hb_144787_030--Hb_000139_250 Hb_144787_030--Hb_000946_120 Hb_000422_140 Hb_000422_140 Hb_144787_030--Hb_000422_140 Hb_004934_090 Hb_004934_090 Hb_005245_130--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_005245_130--Hb_003406_010 Hb_000803_300 Hb_000803_300 Hb_005245_130--Hb_000803_300 Hb_004096_030 Hb_004096_030 Hb_005245_130--Hb_004096_030 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_006400_040 Hb_006400_040 Hb_002027_260--Hb_006400_040 Hb_012634_010 Hb_012634_010 Hb_002027_260--Hb_012634_010 Hb_001623_420 Hb_001623_420 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_002375_020 Hb_002375_020 Hb_002027_260--Hb_002375_020 Hb_001584_290 Hb_001584_290 Hb_010222_080--Hb_001584_290 Hb_002942_220 Hb_002942_220 Hb_010222_080--Hb_002942_220 Hb_017168_010 Hb_017168_010 Hb_010222_080--Hb_017168_010 Hb_010222_080--Hb_000139_250 Hb_004678_020 Hb_004678_020 Hb_010222_080--Hb_004678_020 Hb_010222_080--Hb_004162_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2883 10.5386 4.05129 4.18229 17.7513 13.0581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.64663 10.6489 8.55357 5.15308 4.45566

CAGE analysis