Hb_000236_110

Information

Type -
Description -
Location Contig236: 123336-124440
Sequence    

Annotation

kegg
ID rcu:RCOM_1017840
description Chaperone protein dnaJ 20, chloroplast precursor, putative
nr
ID XP_012071095.1
description PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
swissprot
ID Q9SDN0
description Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=1 SV=2
trembl
ID A0A067L4B0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01092 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24669: 123365-123645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_110 0.0 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
2 Hb_000589_220 0.0913540467 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_002928_180 0.1085994611 - - catalase CAT1 [Manihot esculenta]
4 Hb_002218_070 0.1192194328 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
5 Hb_000778_020 0.1197821418 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
6 Hb_022501_020 0.1265049084 - - AMP dependent CoA ligase, putative [Ricinus communis]
7 Hb_013749_060 0.1283271239 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
8 Hb_001410_010 0.1307112153 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
9 Hb_002928_120 0.1369289661 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
10 Hb_057079_020 0.1386342666 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002600_010 0.1442935789 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
12 Hb_001148_040 0.1448045528 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
13 Hb_005880_010 0.1462476434 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
14 Hb_008175_030 0.1464816626 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
15 Hb_004218_160 0.1512285144 - - NBS-LRR type disease resistance protein [Medicago truncatula]
16 Hb_006594_060 0.1514989303 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
17 Hb_001401_070 0.1515508969 - - glycogenin, putative [Ricinus communis]
18 Hb_010253_020 0.151942269 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_000657_030 0.1519595416 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
20 Hb_025432_010 0.1532392692 - - hypothetical protein JCGZ_21627 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_110 Hb_000236_110 Hb_000589_220 Hb_000589_220 Hb_000236_110--Hb_000589_220 Hb_002928_180 Hb_002928_180 Hb_000236_110--Hb_002928_180 Hb_002218_070 Hb_002218_070 Hb_000236_110--Hb_002218_070 Hb_000778_020 Hb_000778_020 Hb_000236_110--Hb_000778_020 Hb_022501_020 Hb_022501_020 Hb_000236_110--Hb_022501_020 Hb_013749_060 Hb_013749_060 Hb_000236_110--Hb_013749_060 Hb_000589_220--Hb_013749_060 Hb_003894_100 Hb_003894_100 Hb_000589_220--Hb_003894_100 Hb_000589_220--Hb_000778_020 Hb_001410_010 Hb_001410_010 Hb_000589_220--Hb_001410_010 Hb_057079_020 Hb_057079_020 Hb_000589_220--Hb_057079_020 Hb_000429_110 Hb_000429_110 Hb_002928_180--Hb_000429_110 Hb_002928_180--Hb_000778_020 Hb_002928_120 Hb_002928_120 Hb_002928_180--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_002928_180--Hb_010174_190 Hb_002928_180--Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_117840_010 Hb_117840_010 Hb_002218_070--Hb_117840_010 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030 Hb_000778_020--Hb_008175_030 Hb_000778_020--Hb_057079_020 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120 Hb_006241_010 Hb_006241_010 Hb_022501_020--Hb_006241_010 Hb_012807_060 Hb_012807_060 Hb_022501_020--Hb_012807_060 Hb_003453_030 Hb_003453_030 Hb_022501_020--Hb_003453_030 Hb_002551_090 Hb_002551_090 Hb_022501_020--Hb_002551_090 Hb_004044_030 Hb_004044_030 Hb_022501_020--Hb_004044_030 Hb_006594_060 Hb_006594_060 Hb_022501_020--Hb_006594_060 Hb_013749_060--Hb_057079_020 Hb_013749_060--Hb_001410_010 Hb_013749_060--Hb_002928_120 Hb_111985_040 Hb_111985_040 Hb_013749_060--Hb_111985_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.534329 7.5701 0.959993 3.79526 0.268417 0.151769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237059 0.248489 0.222118 5.6324 2.58549

CAGE analysis