Hb_000236_140

Information

Type -
Description -
Location Contig236: 130935-136872
Sequence    

Annotation

kegg
ID vvi:100250375
description pre-mRNA-splicing factor CWC22 homolog
nr
ID XP_012071091.1
description PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWI7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24672: 131098-132525 , PASA_asmbl_24674: 133330-136910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_140 0.0 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
2 Hb_003687_100 0.0698606938 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
3 Hb_004128_180 0.0772242414 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_007416_270 0.0804880192 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
5 Hb_000479_130 0.0831690868 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
6 Hb_007075_050 0.0864843056 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_000172_560 0.0920380998 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750 [Jatropha curcas]
8 Hb_005188_090 0.0935608636 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
9 Hb_000059_220 0.0936164491 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
10 Hb_000997_400 0.0958473391 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
11 Hb_004410_100 0.0991798831 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
12 Hb_004306_060 0.1000091856 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
13 Hb_119600_040 0.1006501482 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
14 Hb_000019_130 0.1030119111 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
15 Hb_011030_020 0.1040734237 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
16 Hb_002006_090 0.1057070193 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
17 Hb_000934_270 0.1071583212 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
18 Hb_002603_160 0.1073163691 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
19 Hb_000001_140 0.107972229 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
20 Hb_005686_030 0.1099577799 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000236_140 Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_000236_140--Hb_003687_100 Hb_004128_180 Hb_004128_180 Hb_000236_140--Hb_004128_180 Hb_007416_270 Hb_007416_270 Hb_000236_140--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000236_140--Hb_000479_130 Hb_007075_050 Hb_007075_050 Hb_000236_140--Hb_007075_050 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_000635_220 Hb_000635_220 Hb_003687_100--Hb_000635_220 Hb_002496_040 Hb_002496_040 Hb_003687_100--Hb_002496_040 Hb_003687_100--Hb_007075_050 Hb_003687_100--Hb_007416_270 Hb_000343_130 Hb_000343_130 Hb_003687_100--Hb_000343_130 Hb_000997_400 Hb_000997_400 Hb_004128_180--Hb_000997_400 Hb_000019_060 Hb_000019_060 Hb_004128_180--Hb_000019_060 Hb_000059_220 Hb_000059_220 Hb_004128_180--Hb_000059_220 Hb_027472_170 Hb_027472_170 Hb_004128_180--Hb_027472_170 Hb_000297_200 Hb_000297_200 Hb_004128_180--Hb_000297_200 Hb_001002_030 Hb_001002_030 Hb_007416_270--Hb_001002_030 Hb_000865_060 Hb_000865_060 Hb_007416_270--Hb_000865_060 Hb_007416_270--Hb_000479_130 Hb_008695_210 Hb_008695_210 Hb_007416_270--Hb_008695_210 Hb_004306_060 Hb_004306_060 Hb_000479_130--Hb_004306_060 Hb_000934_270 Hb_000934_270 Hb_000479_130--Hb_000934_270 Hb_000479_130--Hb_000172_560 Hb_000479_130--Hb_007075_050 Hb_000935_050 Hb_000935_050 Hb_007075_050--Hb_000935_050 Hb_119600_040 Hb_119600_040 Hb_007075_050--Hb_119600_040 Hb_000019_130 Hb_000019_130 Hb_007075_050--Hb_000019_130 Hb_007075_050--Hb_000019_060 Hb_005188_090 Hb_005188_090 Hb_000172_560--Hb_005188_090 Hb_000172_560--Hb_007416_270 Hb_001189_050 Hb_001189_050 Hb_000172_560--Hb_001189_050 Hb_000172_560--Hb_003687_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1581 12.024 4.32348 6.84073 17.8338 18.5649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1514 24.4316 63.1958 11.9212 9.87173

CAGE analysis