Hb_000236_150

Information

Type -
Description -
Location Contig236: 146327-148427
Sequence    

Annotation

kegg
ID rcu:RCOM_0523760
description glycine-rich RNA-binding protein, putative
nr
ID XP_002522811.1
description glycine-rich RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9SVM8
description Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1
trembl
ID B9S9Z2
description Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0523760 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24675: 146295-148305
cDNA
(Sanger)
(ID:Location)		 004_H06.ab1: 146358-148121 , 005_C24.ab1: 146358-148152 , 010_G15.ab1: 146356-148096 , 013_P12.ab1: 146368-148016 , 016_O02.ab1: 146356-148111 , 018_I06.ab1: 146362-147895 , 021_K14.ab1: 146348-148151 , 031_H06.ab1: 146356-148076 , 038_I19.ab1: 146715-148152 , 041_F24.ab1: 146356-148074 , 050_O04.ab1: 146358-148152 , 053_B23.ab1: 146358-148152

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_150 0.0 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
2 Hb_005914_200 0.063629773 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
3 Hb_001780_050 0.0657645633 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
4 Hb_000224_090 0.0698162248 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
5 Hb_000905_180 0.0699981192 - - 60S ribosomal protein L31A [Hevea brasiliensis]
6 Hb_000163_130 0.070795205 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
7 Hb_012539_020 0.0792537273 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
8 Hb_000300_390 0.0807187015 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
9 Hb_000881_080 0.0838959679 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002518_290 0.0891124228 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
11 Hb_000389_080 0.0897489593 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
12 Hb_000001_070 0.0915627936 - - -
13 Hb_000239_030 0.0918172469 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
14 Hb_003185_050 0.0939023512 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
15 Hb_001016_090 0.0950421032 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
16 Hb_000976_250 0.097058511 - - -
17 Hb_005474_060 0.0974472137 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
18 Hb_005000_180 0.1009318297 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
19 Hb_002374_390 0.101134633 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
20 Hb_062135_020 0.1014494118 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000236_150 Hb_000236_150 Hb_005914_200 Hb_005914_200 Hb_000236_150--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000905_180 Hb_000905_180 Hb_000236_150--Hb_000905_180 Hb_000163_130 Hb_000163_130 Hb_000236_150--Hb_000163_130 Hb_012539_020 Hb_012539_020 Hb_000236_150--Hb_012539_020 Hb_005914_200--Hb_001780_050 Hb_005914_200--Hb_012539_020 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_001780_050--Hb_000163_130 Hb_001780_050--Hb_004754_070 Hb_001780_050--Hb_012539_020 Hb_012395_130 Hb_012395_130 Hb_001780_050--Hb_012395_130 Hb_003053_030 Hb_003053_030 Hb_000224_090--Hb_003053_030 Hb_000069_100 Hb_000069_100 Hb_000224_090--Hb_000069_100 Hb_000224_090--Hb_000163_130 Hb_000722_040 Hb_000722_040 Hb_000224_090--Hb_000722_040 Hb_000224_090--Hb_012539_020 Hb_000905_180--Hb_000163_130 Hb_001016_090 Hb_001016_090 Hb_000905_180--Hb_001016_090 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_003185_050 Hb_003185_050 Hb_000905_180--Hb_003185_050 Hb_002374_390 Hb_002374_390 Hb_000905_180--Hb_002374_390 Hb_002835_320 Hb_002835_320 Hb_000163_130--Hb_002835_320 Hb_000163_130--Hb_004754_070 Hb_000163_130--Hb_003053_030 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.1565 66.5388 46.6268 157.97 107.239 202.627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
507.702 893.423 481.6 197.675 83.4952

CAGE analysis