Hb_000236_180

Information

Type -
Description -
Location Contig236: 171591-180876
Sequence    

Annotation

kegg
ID rcu:RCOM_0523510
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_002522806.1
description serine hydroxymethyltransferase, putative [Ricinus communis]
swissprot
ID O23254
description Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana GN=SHM4 PE=1 SV=1
trembl
ID B9S9Y7
description Serine hydroxymethyltransferase OS=Ricinus communis GN=RCOM_0523510 PE=3 SV=1
Gene Ontology
ID GO:0004372
description serine hydroxymethyltransferase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24680: 171590-175018
cDNA
(Sanger)
(ID:Location)		 019_H09.ab1: 174283-175018

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_180 0.0 - - serine hydroxymethyltransferase, putative [Ricinus communis]
2 Hb_000580_110 0.0661777294 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
3 Hb_003470_110 0.0988235813 - - unnamed protein product [Vitis vinifera]
4 Hb_030565_100 0.0988482273 - - serine hydroxymethyltransferase, putative [Ricinus communis]
5 Hb_000417_380 0.1001571834 - - SecY protein transport family protein [Theobroma cacao]
6 Hb_006615_230 0.1072949039 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
7 Hb_000077_100 0.1079295788 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
8 Hb_029223_040 0.1128388245 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
9 Hb_001119_070 0.1161628399 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
10 Hb_001195_090 0.1276311687 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
11 Hb_000077_310 0.1279385096 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
12 Hb_002495_030 0.1292096952 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
13 Hb_098795_030 0.1328427748 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
14 Hb_001493_060 0.1329875479 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
15 Hb_000808_150 0.1341323275 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
16 Hb_000806_130 0.136056452 - - Adenosine kinase 2 [Theobroma cacao]
17 Hb_028639_030 0.1373575092 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
18 Hb_006889_030 0.1373871671 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
19 Hb_000300_420 0.1396885618 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
20 Hb_189003_070 0.14034747 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000236_180 Hb_000236_180 Hb_000580_110 Hb_000580_110 Hb_000236_180--Hb_000580_110 Hb_003470_110 Hb_003470_110 Hb_000236_180--Hb_003470_110 Hb_030565_100 Hb_030565_100 Hb_000236_180--Hb_030565_100 Hb_000417_380 Hb_000417_380 Hb_000236_180--Hb_000417_380 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_000077_100 Hb_000077_100 Hb_000236_180--Hb_000077_100 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_031089_020 Hb_031089_020 Hb_003470_110--Hb_031089_020 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_003470_110--Hb_006615_230 Hb_084147_010 Hb_084147_010 Hb_003470_110--Hb_084147_010 Hb_003470_110--Hb_030565_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_036388_010 Hb_036388_010 Hb_000417_380--Hb_036388_010 Hb_189003_070 Hb_189003_070 Hb_000417_380--Hb_189003_070 Hb_000417_380--Hb_000077_310 Hb_003783_050 Hb_003783_050 Hb_000417_380--Hb_003783_050 Hb_134014_010 Hb_134014_010 Hb_006615_230--Hb_134014_010 Hb_006615_230--Hb_189003_070 Hb_006615_230--Hb_098795_030 Hb_001119_070 Hb_001119_070 Hb_006615_230--Hb_001119_070 Hb_158092_040 Hb_158092_040 Hb_006615_230--Hb_158092_040 Hb_006615_230--Hb_002495_030 Hb_000077_100--Hb_029223_040 Hb_000820_110 Hb_000820_110 Hb_000077_100--Hb_000820_110 Hb_000193_210 Hb_000193_210 Hb_000077_100--Hb_000193_210 Hb_000077_100--Hb_000580_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.73027 29.5222 48.4214 243.206 12.3811 6.58597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.73899 14.0035 20.3505 53.0489 131.195

CAGE analysis