Hb_000236_210

Information

Type -
Description -
Location Contig236: 197441-197794
Sequence    

Annotation

kegg
ID rcu:RCOM_0523490
description RALFL33, putative
nr
ID KDP39326.1
description hypothetical protein JCGZ_01083 [Jatropha curcas]
swissprot
ID Q9LK37
description Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1
trembl
ID A0A067KSY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01083 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24687: 198296-198508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_210 0.0 - - hypothetical protein JCGZ_01083 [Jatropha curcas]
2 Hb_003464_100 0.1096039296 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
3 Hb_000635_020 0.1162370918 - - conserved hypothetical protein [Ricinus communis]
4 Hb_020831_060 0.1231211146 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
5 Hb_003893_060 0.1342942212 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019299_020 0.1464657826 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
7 Hb_000220_020 0.1466810684 - - hypothetical protein CICLE_v10017575mg [Citrus clementina]
8 Hb_002030_190 0.1490837214 - - conserved hypothetical protein [Ricinus communis]
9 Hb_034713_010 0.1519783446 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
10 Hb_005116_090 0.1522065982 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001357_220 0.1556936174 - - dopamine beta-monooxygenase, putative [Ricinus communis]
12 Hb_001269_100 0.1579443078 - - plasma membrane ATPase 1, partial [Triticum aestivum]
13 Hb_000175_600 0.1580169769 - - PREDICTED: TATA-binding protein-associated factor 2N isoform X2 [Jatropha curcas]
14 Hb_003777_150 0.1605222454 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
15 Hb_002164_010 0.1612466503 - - Stellacyanin, putative [Ricinus communis]
16 Hb_140627_040 0.1618038768 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
17 Hb_002228_120 0.1633619527 - - potassium channel beta, putative [Ricinus communis]
18 Hb_000011_260 0.1640447759 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006816_240 0.1640599176 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
20 Hb_001246_080 0.164827152 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]

Gene co-expression network

sample Hb_000236_210 Hb_000236_210 Hb_003464_100 Hb_003464_100 Hb_000236_210--Hb_003464_100 Hb_000635_020 Hb_000635_020 Hb_000236_210--Hb_000635_020 Hb_020831_060 Hb_020831_060 Hb_000236_210--Hb_020831_060 Hb_003893_060 Hb_003893_060 Hb_000236_210--Hb_003893_060 Hb_019299_020 Hb_019299_020 Hb_000236_210--Hb_019299_020 Hb_000220_020 Hb_000220_020 Hb_000236_210--Hb_000220_020 Hb_000175_600 Hb_000175_600 Hb_003464_100--Hb_000175_600 Hb_004102_180 Hb_004102_180 Hb_003464_100--Hb_004102_180 Hb_069384_010 Hb_069384_010 Hb_003464_100--Hb_069384_010 Hb_002326_090 Hb_002326_090 Hb_003464_100--Hb_002326_090 Hb_011218_010 Hb_011218_010 Hb_003464_100--Hb_011218_010 Hb_005116_090 Hb_005116_090 Hb_000635_020--Hb_005116_090 Hb_006816_240 Hb_006816_240 Hb_000635_020--Hb_006816_240 Hb_140627_040 Hb_140627_040 Hb_000635_020--Hb_140627_040 Hb_007100_010 Hb_007100_010 Hb_000635_020--Hb_007100_010 Hb_002228_120 Hb_002228_120 Hb_000635_020--Hb_002228_120 Hb_000011_260 Hb_000011_260 Hb_020831_060--Hb_000011_260 Hb_004970_100 Hb_004970_100 Hb_020831_060--Hb_004970_100 Hb_020831_060--Hb_019299_020 Hb_000000_300 Hb_000000_300 Hb_020831_060--Hb_000000_300 Hb_003777_150 Hb_003777_150 Hb_020831_060--Hb_003777_150 Hb_008406_050 Hb_008406_050 Hb_003893_060--Hb_008406_050 Hb_003893_060--Hb_003464_100 Hb_001269_100 Hb_001269_100 Hb_003893_060--Hb_001269_100 Hb_004732_070 Hb_004732_070 Hb_003893_060--Hb_004732_070 Hb_001246_080 Hb_001246_080 Hb_003893_060--Hb_001246_080 Hb_000139_460 Hb_000139_460 Hb_019299_020--Hb_000139_460 Hb_000740_080 Hb_000740_080 Hb_019299_020--Hb_000740_080 Hb_002304_110 Hb_002304_110 Hb_019299_020--Hb_002304_110 Hb_001257_140 Hb_001257_140 Hb_019299_020--Hb_001257_140 Hb_010863_020 Hb_010863_020 Hb_019299_020--Hb_010863_020 Hb_000352_360 Hb_000352_360 Hb_019299_020--Hb_000352_360 Hb_000220_020--Hb_019299_020 Hb_000220_020--Hb_000139_460 Hb_000220_020--Hb_002304_110 Hb_001616_010 Hb_001616_010 Hb_000220_020--Hb_001616_010 Hb_017061_010 Hb_017061_010 Hb_000220_020--Hb_017061_010 Hb_034713_010 Hb_034713_010 Hb_000220_020--Hb_034713_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.74272 4.36982 14.5276 82.5699 1.03461 1.39327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2756 0.400968 0.614871 3.36594 3.69955

CAGE analysis