Hb_000236_230

Information

Type -
Description -
Location Contig236: 210741-212674
Sequence    

Annotation

kegg
ID vvi:100260079
description E3 ubiquitin-protein ligase At4g11680
nr
ID XP_012071078.1
description PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
swissprot
ID Q93Z92
description E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
trembl
ID A0A067KT66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01079 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase at4g11680

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24692: 210703-211309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_230 0.0 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
2 Hb_000428_040 0.1073923353 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
3 Hb_001366_110 0.1164745407 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000251_120 0.1322611232 - - O-acetyltransferase, putative [Ricinus communis]
5 Hb_116701_010 0.1367350078 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
6 Hb_000130_350 0.1402404677 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
7 Hb_005183_130 0.143581404 - - glycogenin, putative [Ricinus communis]
8 Hb_000226_120 0.1440728105 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
9 Hb_001541_060 0.1443378328 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000108_180 0.1469628289 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
11 Hb_158092_050 0.148637696 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
12 Hb_001214_040 0.149528455 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
13 Hb_000165_020 0.1495996474 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
14 Hb_001001_070 0.1512459427 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
15 Hb_147745_010 0.1518336261 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
16 Hb_150486_010 0.1524852767 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
17 Hb_008762_010 0.1569621229 - - dopamine beta-monooxygenase, putative [Ricinus communis]
18 Hb_000176_080 0.161647982 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
19 Hb_004657_070 0.1644385844 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
20 Hb_000392_540 0.173504204 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]

Gene co-expression network

sample Hb_000236_230 Hb_000236_230 Hb_000428_040 Hb_000428_040 Hb_000236_230--Hb_000428_040 Hb_001366_110 Hb_001366_110 Hb_000236_230--Hb_001366_110 Hb_000251_120 Hb_000251_120 Hb_000236_230--Hb_000251_120 Hb_116701_010 Hb_116701_010 Hb_000236_230--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_000236_230--Hb_000130_350 Hb_005183_130 Hb_005183_130 Hb_000236_230--Hb_005183_130 Hb_004657_070 Hb_004657_070 Hb_000428_040--Hb_004657_070 Hb_000428_040--Hb_116701_010 Hb_000428_040--Hb_000130_350 Hb_008762_010 Hb_008762_010 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140 Hb_158092_050 Hb_158092_050 Hb_001366_110--Hb_158092_050 Hb_001366_110--Hb_116701_010 Hb_001366_110--Hb_000130_350 Hb_000108_180 Hb_000108_180 Hb_001366_110--Hb_000108_180 Hb_001541_060 Hb_001541_060 Hb_001366_110--Hb_001541_060 Hb_001001_070 Hb_001001_070 Hb_000251_120--Hb_001001_070 Hb_000251_120--Hb_000108_180 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_003177_040 Hb_003177_040 Hb_000251_120--Hb_003177_040 Hb_008461_060 Hb_008461_060 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380 Hb_116701_010--Hb_000130_350 Hb_116701_010--Hb_158092_050 Hb_116701_010--Hb_008762_010 Hb_000173_240 Hb_000173_240 Hb_116701_010--Hb_000173_240 Hb_000130_350--Hb_158092_050 Hb_031284_060 Hb_031284_060 Hb_000130_350--Hb_031284_060 Hb_000130_350--Hb_000173_240 Hb_000130_350--Hb_008762_010 Hb_000176_080 Hb_000176_080 Hb_005183_130--Hb_000176_080 Hb_004586_440 Hb_004586_440 Hb_005183_130--Hb_004586_440 Hb_000482_080 Hb_000482_080 Hb_005183_130--Hb_000482_080 Hb_000020_140 Hb_000020_140 Hb_005183_130--Hb_000020_140 Hb_005183_130--Hb_001001_070 Hb_000449_070 Hb_000449_070 Hb_005183_130--Hb_000449_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.927652 2.41142 2.13331 54.5141 1.07689 1.03774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05988 2.14394 1.99989 2.1687 28.6837

CAGE analysis